Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Reverse (-)

42225643 .. 42225975

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCAGGAGTAGTGCCAACACGCCTATCAGGCCGACCAATAACCGGTGGACTCCCACACCAGATCAACTAAGAATCCTACAGGTGCTTTACTATGACAAGGTGCTTAAATGCCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTAATCTGCAACAATATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCTAGAGAGGCAGAAGTTGAAGGAATTTCAGAACGTTCCGGTTGGTGGATCTCTCGATCTGCTATGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

110

Amino Acids

12.75

Weight (kDa)

5.38

Isoelectric Point (pI)

61.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	2.2e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	93, 305
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	182, 280
AjnI	CCWGG	1 cut(s)	53
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	284
AsiGI	ACCGGT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	55
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	2 cut(s)	93, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 305
Bse118I	RCCGGY	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	93, 305
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	94, 299
BslI	CCNNNNNNNGG	2 cut(s)	93, 305
BsnI	GGCC	1 cut(s)	82
Bsp143I	GATC	5 cut(s)	112, 186, 216, 308, 316
BspANI	GGCC	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	5 cut(s)	112, 186, 216, 308, 316
Bst2UI	CCWGG	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	5 cut(s)	115, 189, 219, 311, 319
BstMBI	GATC	5 cut(s)	112, 186, 216, 308, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	2 cut(s)	186, 308
BstYI	RGATCY	2 cut(s)	186, 308
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	93
CspAI	ACCGGT	1 cut(s)	93
CviJI	RGCY	4 cut(s)	14, 53, 82, 260
CviKI_1	RGCY	4 cut(s)	14, 53, 82, 260
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	5 cut(s)	114, 188, 218, 310, 318
DpnII	GATC	5 cut(s)	112, 186, 216, 308, 316
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	53
FaiI	YATR	3 cut(s)	144, 210, 325
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	94, 299
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	2 cut(s)	94, 299
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	5 cut(s)	170, 182, 247, 263, 314
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	231, 294
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	2 cut(s)	231, 294
Kzo9I	GATC	5 cut(s)	112, 186, 216, 308, 316
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	2 cut(s)	231, 294
MalI	GATC	5 cut(s)	114, 188, 218, 310, 318
MboI	GATC	5 cut(s)	112, 186, 216, 308, 316
MboII	GAAGA	1 cut(s)	226
MflI	RGATCY	2 cut(s)	186, 308
MluCI	AATT	2 cut(s)	5, 284
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	6 cut(s)	22, 25, 29, 214, 261, 263
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	2 cut(s)	156, 195
MspI	CCGG	2 cut(s)	94, 299
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	5 cut(s)	112, 186, 216, 308, 316
NlaIV	GGNNCC	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	123, 178
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	186, 308
SaqAI	TTAA	2 cut(s)	156, 195
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	5 cut(s)	112, 186, 216, 308, 316
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	5 cut(s)	135, 153, 234, 255, 297
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	5, 284
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	53
TaiI	ACGT	2 cut(s)	234, 297
TaqI	TCGA	2 cut(s)	219, 315
TasI	AATT	2 cut(s)	5, 284
TfiI	GAWTC	2 cut(s)	123, 178
Tru1I	TTAA	2 cut(s)	156, 195
Tru9I	TTAA	2 cut(s)	156, 195
TseI	GCWGC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	284
XbaI	TCTAGA	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.