Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006171.1

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

70909 .. 71573

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006171.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggaaccacgaactctgcaactaatagagttacaagcccagcaaccaaccgaggagggaggaggcatccaagcagccgggagtagtgccaacacgcctatcaggccgaccaataaccggtggactcccacaccagatcaactaagaatcctccaggagctttactatgacaaggtgcttaaatgcccaactccagagcagattcaagagatttgccttaatctgcaacaatatgggcagatcgaggacaagaacgtcttcttttggttccagaacctcaaggctcgcatcgccgcgcatgccatgccaggcacatgctgcgcagaactcagctatggctactactccggtggctgggacgacaacaatggtggttcttgcatttcttttgagcttagtctcaactcctccggagctgctgacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

143

Amino Acids

15.85

Weight (kDa)

4.54

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
Acc16I	TGCGCA	1 cut(s)	322
AccII	CGCG	1 cut(s)	296
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	117, 354
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	2 cut(s)	153, 307
AluBI	AGCT	4 cut(s)	160, 333, 394, 416
AluI	AGCT	4 cut(s)	160, 333, 394, 416
Alw26I	GTCTC	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	410
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	3 cut(s)	74, 318, 416
AsiGI	ACCGGT	1 cut(s)	117
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	298, 323
AsuC2I	CCSGG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	86, 305, 403
BciT130I	CCWGG	2 cut(s)	155, 309
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	404
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	4 cut(s)	75, 294, 319, 417
BlsI	GCNGC	4 cut(s)	76, 295, 320, 418
Bme1390I	CCNGG	3 cut(s)	79, 155, 309
BmiI	GGNNCC	2 cut(s)	6, 269
BmrFI	CCNGG	3 cut(s)	79, 155, 309
BmsI	GCATC	2 cut(s)	75, 297
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	2 cut(s)	137, 177
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	3 cut(s)	117, 347, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 354
Bse118I	RCCGGY	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	155, 309
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	117, 354
BseMII	CTCAG	1 cut(s)	343
BseRI	GAGGAG	3 cut(s)	68, 75, 397
BseXI	GCAGC	3 cut(s)	86, 305, 403
BseYI	CCCAGC	2 cut(s)	39, 354
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	106
BshTI	ACCGGT	1 cut(s)	117
BsiSI	CCGG	4 cut(s)	78, 118, 348, 411
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	117, 354
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	106
Bsp13I	TCCGGA	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	136, 240
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	342
BspEI	TCCGGA	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	6, 269
BsrFI	RCCGGY	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	136, 240
Bst2UI	CCWGG	2 cut(s)	155, 309
BstAPI	GCANNNNNTGC	2 cut(s)	304, 318
BstC8I	GCNNGC	2 cut(s)	286, 300
BstDEI	CTNAG	4 cut(s)	143, 329, 395, 429
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	2 cut(s)	298, 323
BstKTI	GATC	2 cut(s)	139, 243
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	2 cut(s)	136, 240
BstMWI	GCNNNNNNNGC	6 cut(s)	103, 290, 299, 304, 318, 425
BstNI	CCWGG	2 cut(s)	155, 309
BstNSI	RCATGY	2 cut(s)	302, 318
BstSCI	CCNGG	3 cut(s)	77, 153, 307
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	3 cut(s)	86, 305, 403
BstV2I	GAAGAC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	106
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	286, 300
CfoI	GCGC	2 cut(s)	298, 323
Cfr10I	RCCGGY	1 cut(s)	117
CspAI	ACCGGT	1 cut(s)	117
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	4 cut(s)	299, 304, 315, 424
DdeI	CTNAG	4 cut(s)	143, 329, 395, 429
DpnI	GATC	2 cut(s)	138, 242
DpnII	GATC	2 cut(s)	136, 240
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	153, 307
FaeI	CATG	4 cut(s)	302, 307, 318, 427
FaiI	YATR	7 cut(s)	168, 234, 300, 305, 316, 336, 425
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	4 cut(s)	298, 303, 314, 423
Fnu4HI	GCNGC	4 cut(s)	75, 294, 319, 417
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	4 cut(s)	75, 294, 319, 417
FspI	TGCGCA	1 cut(s)	322
GlaI	GCGC	2 cut(s)	297, 322
GluI	GCNGC	4 cut(s)	75, 294, 319, 417
GsaI	CCCAGC	2 cut(s)	43, 358
GsuI	CTGGAG	2 cut(s)	137, 177
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	4 cut(s)	78, 118, 348, 411
HhaI	GCGC	2 cut(s)	298, 323
Hin1II	CATG	4 cut(s)	302, 307, 318, 427
Hin6I	GCGC	2 cut(s)	296, 321
HinP1I	GCGC	2 cut(s)	296, 321
HinfI	GANTC	3 cut(s)	124, 147, 202
HpaII	CCGG	4 cut(s)	78, 118, 348, 411
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188III	TCNNGA	4 cut(s)	194, 206, 271, 411
Hpy8I	GTNNAC	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	19, 226, 381
HpyF10VI	GCNNNNNNNGC	6 cut(s)	103, 290, 299, 304, 318, 425
HpyF3I	CTNAG	4 cut(s)	143, 329, 395, 429
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	302, 307, 318, 427
HspAI	GCGC	2 cut(s)	296, 321
Kpn2I	TCCGGA	1 cut(s)	410
Kzo9I	GATC	2 cut(s)	136, 240
LmnI	GCTCC	2 cut(s)	157, 413
Lsp1109I	GCAGC	3 cut(s)	86, 305, 403
LweI	GCATC	2 cut(s)	75, 297
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	2 cut(s)	138, 242
MboI	GATC	2 cut(s)	136, 240
MboII	GAAGA	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	8 cut(s)	46, 49, 53, 56, 161, 238, 287, 418
MroI	TCCGGA	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	180, 219
MspI	CCGG	4 cut(s)	78, 118, 348, 411
MspR9I	CCNGG	3 cut(s)	79, 155, 309
MvaI	CCWGG	2 cut(s)	155, 309
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	6 cut(s)	103, 290, 299, 304, 318, 425
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	2 cut(s)	136, 240
NlaIII	CATG	4 cut(s)	302, 307, 318, 427
NlaIV	GGNNCC	2 cut(s)	6, 269
NsbI	TGCGCA	1 cut(s)	322
NspI	RCATGY	2 cut(s)	302, 318
PaeI	GCATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	147, 202
PfoI	TCCNGGA	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	4 cut(s)	76, 295, 320, 418
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	153, 307
PspFI	CCCAGC	2 cut(s)	39, 354
PspGI	CCWGG	2 cut(s)	153, 307
PspN4I	GGNNCC	2 cut(s)	6, 269
SaqAI	TTAA	2 cut(s)	180, 219
SatI	GCNGC	4 cut(s)	75, 294, 319, 417
Sau3AI	GATC	2 cut(s)	136, 240
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	79, 155, 309
SetI	ASST	7 cut(s)	162, 177, 258, 279, 335, 396, 418
SfaNI	GCATC	2 cut(s)	75, 297
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SphI	GCATGC	1 cut(s)	302
SsiI	CCGC	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	77, 153, 307
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	243
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	2 cut(s)	147, 202
Tru1I	TTAA	2 cut(s)	180, 219
Tru9I	TTAA	2 cut(s)	180, 219
TseI	GCWGC	3 cut(s)	74, 318, 416
XceI	RCATGY	2 cut(s)	302, 318
XmnI	GAANNNNTTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.