Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000772.1

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Reverse (-)

84932 .. 85624

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000772.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggaaccacgaactctgcaactaatggagttacaagcccagcaaccaaccgaggagggaggaagcatccaagcagccgggagtagtgccaacacgcctgtcaggccgaccaataaccagtggactcccacaccagatcaactaagaatcctccaggagctttactatgacaaggtgcttaaatgcccaactccagagcagattcaagagatctgccttaatctgcaacaatatgggcagatcgaggacaagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgagggaatttcggaacgttcgggttggtggatctctcgatctcaattttggatccactagttctactgatgatggtaggtccattgatctaaactttggttccactggttcaactagtactaacagatccattgatctaaattttgggtcacgtgtcggctatggtgttgatggatccatcatggaacaacgaagagaatatcaccaggagattgaaacccttccactgttccccatgcacggtgagaacgtccttggcaacatgaagactacttccgagggaggtagcggctatggttggtacttcggtggctgggacgacaacaatggtggttcttgcatttctcttgagcttagtctcaactcctccggagctgctgacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

230

Amino Acids

25.59

Weight (kDa)

4.72

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	671
AciI	CCGC	1 cut(s)	591
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	6 cut(s)	340, 348, 361, 423, 471, 484
AcsI	RAATTY	2 cut(s)	308, 442
AcvI	CACGTG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	421, 605
AfiI	CCNNNNNNNGG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	3 cut(s)	206, 414, 518
AhlI	ACTAGT	2 cut(s)	359, 416
AjnI	CCWGG	2 cut(s)	153, 507
AluBI	AGCT	3 cut(s)	160, 655, 677
AluI	AGCT	3 cut(s)	160, 655, 677
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	6 cut(s)	340, 348, 361, 423, 471, 484
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	74, 677
ApoI	RAATTY	2 cut(s)	308, 442
Asp700I	GAANNNNTTC	2 cut(s)	257, 522
AspS9I	GGNCC	1 cut(s)	381
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	497, 557
AvaII	GGWCC	1 cut(s)	381
BaeI	ACNNNNGTAYC	2 cut(s)	595, 628
BamHI	GGATCC	2 cut(s)	353, 476
BauI	CACGAG	1 cut(s)	285
BbrPI	CACGTG	1 cut(s)	455
BbsI	GAAGAC	2 cut(s)	250, 575
BbvI	GCAGC	2 cut(s)	86, 664
BccI	CCATC	3 cut(s)	368, 467, 488
BciT130I	CCWGG	2 cut(s)	155, 509
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	665
BcuI	ACTAGT	2 cut(s)	359, 416
BfaI	CTAG	2 cut(s)	360, 417
BglI	GCCNNNNNGGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	3 cut(s)	75, 592, 678
BlsI	GCNGC	3 cut(s)	76, 593, 679
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	3 cut(s)	79, 155, 509
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	5 cut(s)	6, 269, 355, 403, 478
BmrFI	CCNGG	3 cut(s)	79, 155, 509
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	2 cut(s)	250, 575
BpmI	CTGGAG	2 cut(s)	137, 177
BpuEI	CTTGAG	2 cut(s)	263, 671
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	455
BsaJI	CCNNGG	3 cut(s)	51, 556, 579
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	118, 412
BseAI	TCCGGA	1 cut(s)	671
BseBI	CCWGG	2 cut(s)	155, 509
BseDI	CCNNGG	3 cut(s)	51, 556, 579
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseNI	ACTGG	2 cut(s)	118, 412
BseRI	GAGGAG	2 cut(s)	68, 658
BseXI	GCAGC	2 cut(s)	86, 664
BseYI	CCCAGC	2 cut(s)	39, 615
BshFI	GGCC	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	78, 672
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	106
Bsp13I	TCCGGA	1 cut(s)	671
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	1 cut(s)	106
BspEI	TCCGGA	1 cut(s)	671
BspLI	GGNNCC	5 cut(s)	6, 269, 355, 403, 478
BspPI	GGATC	6 cut(s)	340, 348, 361, 423, 471, 484
BsrI	ACTGG	2 cut(s)	118, 412
BssECI	CCNNGG	3 cut(s)	51, 556, 579
BssSI	CACGAG	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	556
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	155, 509
Bst4CI	ACNGT	2 cut(s)	531, 545
Bst6I	CTCTTC	1 cut(s)	490
BstBAI	YACGTR	1 cut(s)	455
BstDEI	CTNAG	3 cut(s)	143, 656, 690
BstF5I	GGATG	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	665
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 686
BstNI	CCWGG	2 cut(s)	155, 509
BstSCI	CCNGG	3 cut(s)	77, 153, 507
BstV1I	GCAGC	2 cut(s)	86, 664
BstV2I	GAAGAC	2 cut(s)	250, 575
BstX2I	RGATCY	5 cut(s)	210, 332, 353, 428, 476
BstYI	RGATCY	5 cut(s)	210, 332, 353, 428, 476
BsuRI	GGCC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	125, 405, 527
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	420, 604
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	4 cut(s)	484, 538, 565, 685
CviQI	GTAC	2 cut(s)	420, 604
DdeI	CTNAG	3 cut(s)	143, 656, 690
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	381
Eco72I	CACGTG	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	153, 507
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	4 cut(s)	487, 541, 568, 688
FaiI	YATR	8 cut(s)	168, 234, 465, 485, 539, 566, 597, 686
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	4 cut(s)	483, 537, 564, 684
Fnu4HI	GCNGC	3 cut(s)	75, 592, 678
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	75, 592, 678
FspBI	CTAG	2 cut(s)	360, 417
GluI	GCNGC	3 cut(s)	75, 592, 678
GsaI	CCCAGC	2 cut(s)	43, 619
GsuI	CTGGAG	2 cut(s)	137, 177
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	2 cut(s)	78, 672
Hin1II	CATG	4 cut(s)	487, 541, 568, 688
HinfI	GANTC	3 cut(s)	124, 147, 202
HpaII	CCGG	2 cut(s)	78, 672
HphI	GGTGA	2 cut(s)	497, 557
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	315, 580
Hpy188III	TCNNGA	7 cut(s)	194, 206, 271, 287, 338, 650, 672
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	2 cut(s)	531, 545
HpyCH4IV	ACGT	4 cut(s)	255, 318, 454, 552
HpyCH4V	TGCA	4 cut(s)	19, 226, 541, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 686
HpyF3I	CTNAG	3 cut(s)	143, 656, 690
HpySE526I	ACGT	4 cut(s)	255, 318, 454, 552
Hsp92II	CATG	4 cut(s)	487, 541, 568, 688
Kpn2I	TCCGGA	1 cut(s)	671
LmnI	GCTCC	2 cut(s)	157, 674
Lsp1109I	GCAGC	2 cut(s)	86, 664
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	360, 417
MaeII	ACGT	4 cut(s)	255, 318, 454, 552
MaeIII	GTNAC	2 cut(s)	30, 450
MboII	GAAGA	3 cut(s)	250, 507, 580
MflI	RGATCY	5 cut(s)	210, 332, 353, 428, 476
MluCI	AATT	3 cut(s)	308, 346, 442
MlyI	GAGTC	1 cut(s)	118
MroI	TCCGGA	1 cut(s)	671
MroXI	GAANNNNTTC	2 cut(s)	257, 522
MseI	TTAA	2 cut(s)	180, 219
MspI	CCGG	2 cut(s)	78, 672
MspR9I	CCNGG	3 cut(s)	79, 155, 509
MvaI	CCWGG	2 cut(s)	155, 509
MwoI	GCNNNNNNNGC	2 cut(s)	103, 686
NciI	CCSGG	1 cut(s)	79
NlaIII	CATG	4 cut(s)	487, 541, 568, 688
NlaIV	GGNNCC	5 cut(s)	6, 269, 355, 403, 478
NmuCI	GTSAC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PdmI	GAANNNNTTC	2 cut(s)	257, 522
PfeI	GAWTC	2 cut(s)	147, 202
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	76, 593, 679
PleI	GAGTC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	455
PmlI	CACGTG	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	455
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	153, 507
PspCI	CACGTG	1 cut(s)	455
PspFI	CCCAGC	2 cut(s)	39, 615
PspGI	CCWGG	2 cut(s)	153, 507
PspN4I	GGNNCC	5 cut(s)	6, 269, 355, 403, 478
PspPI	GGNCC	1 cut(s)	381
PsuI	RGATCY	5 cut(s)	210, 332, 353, 428, 476
RsaI	GTAC	2 cut(s)	421, 605
RsaNI	GTAC	2 cut(s)	420, 604
SaqAI	TTAA	2 cut(s)	180, 219
SatI	GCNGC	3 cut(s)	75, 592, 678
Sau96I	GGNCC	1 cut(s)	381
ScaI	AGTACT	1 cut(s)	421
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	79, 155, 509
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	278, 650
SmoI	CTYRAG	2 cut(s)	278, 650
SpeI	ACTAGT	2 cut(s)	359, 416
Sse9I	AATT	3 cut(s)	308, 346, 442
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	2 cut(s)	360, 417
StyD4I	CCNGG	3 cut(s)	77, 153, 507
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	531, 545
TaiI	ACGT	4 cut(s)	258, 321, 457, 555
TaqI	TCGA	2 cut(s)	243, 339
TasI	AATT	3 cut(s)	308, 346, 442
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	2 cut(s)	147, 202
Tru1I	TTAA	2 cut(s)	180, 219
Tru9I	TTAA	2 cut(s)	180, 219
TscAI	CASTG	3 cut(s)	125, 412, 534
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	2 cut(s)	74, 677
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	1 cut(s)	581
TspRI	CASTG	3 cut(s)	125, 412, 534
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	2 cut(s)	308, 442
XmnI	GAANNNNTTC	2 cut(s)	257, 522
XspI	CTAG	2 cut(s)	360, 417
ZrmI	AGTACT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.