Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000210.1

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

21843 .. 22529

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000210.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggaaccacgaactctgcaactaatggagttacaaacccagcaacaaatggaattacaagcccagcaaccaactgaggagggaggaagcatccaagcagccgggagtagtgccaacacgcctatcaggccgaccaataaccggtggactcccacaccagatcaactaagaatcctccaggagctttactatgacaaggtgcttaaaaacccaactccagagcagattcaagagatctgcctttatctgcaacaatatgggcatatcgaggacaagaacgtcttcttttggttccagaaccttaaggctcgtgaaaggcagaagttgagggaatttcggaacgttcgggttggtggatctctcgatctcaattttggatccactagttctgctgatgatggtaggtccattgatctaaactttggttccactggttctactagtactgacagatccattgatctaaattttgggtcacgtgtcggctatggtgttgatggatcgatcatggaacaacgaggagaatatcaccaggagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactacttccgagggaggtagcggttatggcggtggctctcgcatttcccttgagctcagcctcaactcctacggagatgcagacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

228

Amino Acids

25.53

Weight (kDa)

4.75

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AciI	CCGC	2 cut(s)	615, 624
AclI	AACGTT	1 cut(s)	342
AclWI	GGATC	5 cut(s)	364, 372, 385, 447, 508
AcsI	RAATTY	2 cut(s)	332, 466
AcvI	CACGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	2 cut(s)	141, 566
AflII	CTTAAG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	478
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	230, 542
AhlI	ACTAGT	2 cut(s)	383, 440
AjnI	CCWGG	2 cut(s)	177, 531
AluBI	AGCT	2 cut(s)	184, 649
AluI	AGCT	2 cut(s)	184, 649
Alw21I	GWGCWC	1 cut(s)	651
AlwI	GGATC	5 cut(s)	364, 372, 385, 447, 508
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	332, 466
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	281, 546
AspS9I	GGNCC	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	521, 581
AvaII	GGWCC	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	651
BauI	CACGAG	1 cut(s)	309
BbrPI	CACGTG	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	274, 599
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	392, 491
BciT130I	CCWGG	2 cut(s)	179, 533
BcnI	CCSGG	1 cut(s)	103
BcuI	ACTAGT	2 cut(s)	383, 440
BfaI	CTAG	2 cut(s)	384, 441
BfrI	CTTAAG	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	1 cut(s)	99
BlpI	GCTNAGC	1 cut(s)	650
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	3 cut(s)	103, 179, 533
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	4 cut(s)	6, 293, 379, 427
BmrFI	CCNGG	3 cut(s)	103, 179, 533
BmsI	GCATC	2 cut(s)	99, 661
BpiI	GAAGAC	2 cut(s)	274, 599
BpmI	CTGGAG	2 cut(s)	161, 201
Bpu1102I	GCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	603
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 566
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	436
BseBI	CCWGG	2 cut(s)	179, 533
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	141, 566
BseMII	CTCAG	2 cut(s)	66, 664
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	2 cut(s)	92, 534
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	39, 63
BshFI	GGCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	141
BshVI	ATCGAT	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	2 cut(s)	102, 142
BslI	CCNNNNNNNGG	2 cut(s)	141, 566
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp1720I	GCTNAGC	1 cut(s)	650
BspACI	CCGC	2 cut(s)	615, 624
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	67, 663
BspDI	ATCGAT	1 cut(s)	503
BspLI	GGNNCC	4 cut(s)	6, 293, 379, 427
BspPI	GGATC	5 cut(s)	364, 372, 385, 447, 508
BspTI	CTTAAG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	436
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	603
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	179, 533
BstAFI	CTTAAG	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	479
BstDEI	CTNAG	4 cut(s)	75, 167, 650, 684
BstF5I	GGATG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 621, 680
BstNI	CCWGG	2 cut(s)	179, 533
BstSCI	CCNGG	3 cut(s)	101, 177, 531
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	274, 599
BstX2I	RGATCY	4 cut(s)	234, 356, 377, 452
BstYI	RGATCY	4 cut(s)	234, 356, 377, 452
Bsu15I	ATCGAT	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	130
BsuTUI	ATCGAT	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	405
ClaI	ATCGAT	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	444
CspAI	ACCGGT	1 cut(s)	141
CviAII	CATG	5 cut(s)	508, 562, 566, 589, 679
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	4 cut(s)	75, 167, 650, 684
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	649
Eco72I	CACGTG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	649
EcoRII	CCWGG	2 cut(s)	177, 531
EcoT22I	ATGCAT	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	651
FaeI	CATG	5 cut(s)	511, 565, 569, 592, 682
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	5 cut(s)	507, 561, 565, 588, 678
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	384, 441
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	2 cut(s)	161, 201
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	2 cut(s)	102, 142
Hin1II	CATG	5 cut(s)	511, 565, 569, 592, 682
HinfI	GANTC	3 cut(s)	148, 171, 226
HpaII	CCGG	2 cut(s)	102, 142
HphI	GGTGA	2 cut(s)	521, 581
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	339, 604
Hpy188III	TCNNGA	5 cut(s)	218, 230, 295, 311, 362
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	557
HpyCH4IV	ACGT	3 cut(s)	279, 342, 478
HpyCH4V	TGCA	4 cut(s)	19, 250, 565, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 621, 680
HpyF3I	CTNAG	4 cut(s)	75, 167, 650, 684
HpySE526I	ACGT	3 cut(s)	279, 342, 478
Hsp92II	CATG	5 cut(s)	511, 565, 569, 592, 682
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	99, 661
MaeI	CTAG	2 cut(s)	384, 441
MaeII	ACGT	3 cut(s)	279, 342, 478
MaeIII	GTNAC	2 cut(s)	30, 474
MboII	GAAGA	2 cut(s)	274, 604
MflI	RGATCY	4 cut(s)	234, 356, 377, 452
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	4 cut(s)	53, 332, 370, 466
MlyI	GAGTC	1 cut(s)	142
Mph1103I	ATGCAT	1 cut(s)	567
MroXI	GAANNNNTTC	2 cut(s)	281, 546
MseI	TTAA	2 cut(s)	204, 303
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	2 cut(s)	102, 142
MspR9I	CCNGG	3 cut(s)	103, 179, 533
MvaI	CCWGG	2 cut(s)	179, 533
MwoI	GCNNNNNNNGC	3 cut(s)	127, 621, 680
NciI	CCSGG	1 cut(s)	103
NlaIII	CATG	5 cut(s)	511, 565, 569, 592, 682
NlaIV	GGNNCC	4 cut(s)	6, 293, 379, 427
NmuCI	GTSAC	1 cut(s)	474
NsiI	ATGCAT	1 cut(s)	567
PdmI	GAANNNNTTC	2 cut(s)	281, 546
PfeI	GAWTC	2 cut(s)	171, 226
PfoI	TCCNGGA	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	142
PmaCI	CACGTG	1 cut(s)	479
PmlI	CACGTG	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	177, 531
PspCI	CACGTG	1 cut(s)	479
PspFI	CCCAGC	2 cut(s)	39, 63
PspGI	CCWGG	2 cut(s)	177, 531
PspN4I	GGNNCC	4 cut(s)	6, 293, 379, 427
PspPI	GGNCC	1 cut(s)	405
PsuI	RGATCY	4 cut(s)	234, 356, 377, 452
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	204, 303
SatI	GCNGC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	405
ScaI	AGTACT	1 cut(s)	445
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	3 cut(s)	103, 179, 533
SduI	GDGCHC	1 cut(s)	651
SetI	ASST	9 cut(s)	186, 201, 282, 303, 345, 407, 481, 613, 651
SfaNI	GCATC	2 cut(s)	99, 661
SinI	GGWCC	1 cut(s)	405
SmlI	CTYRAG	2 cut(s)	302, 644
SmoI	CTYRAG	2 cut(s)	302, 644
SpeI	ACTAGT	2 cut(s)	383, 440
Sse9I	AATT	4 cut(s)	53, 332, 370, 466
SsiI	CCGC	2 cut(s)	615, 624
SspMI	CTAG	2 cut(s)	384, 441
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	3 cut(s)	101, 177, 531
TaiI	ACGT	3 cut(s)	282, 345, 481
TaqI	TCGA	3 cut(s)	267, 363, 503
TasI	AATT	4 cut(s)	53, 332, 370, 466
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	171, 226
Tru1I	TTAA	2 cut(s)	204, 303
Tru9I	TTAA	2 cut(s)	204, 303
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	1 cut(s)	605
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	1 cut(s)	436
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	2 cut(s)	332, 466
XmnI	GAANNNNTTC	2 cut(s)	281, 546
XspI	CTAG	2 cut(s)	384, 441
ZrmI	AGTACT	1 cut(s)	445
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.