Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

34075892 .. 34076601

Gene Structure 710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGTTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTGCCAACACGCCTATCAGACCGACCAATAACCGGTGGACTCCCACACCAGATCAACTAAGAATCCTCCAGGAGCTTTACTATGACAAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAGGGAATTTCGGAACGTTCGGGTTGGTGGGTCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGGTCCATTGATCTAAACTTTGGTTCCACTGGTTCTACTAGTACTGACAGATCCATTGATCTAAATTTTGGGTCATGTGTCGGCTATGGTGTTGATGGATCGATCATGAAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTGTTCCCCATGCACGGTGAGAACGTCCTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATATGGTTGGTACTCCGGTGGCTGGGACGACAACAATGGTGGTTCTTGCATTTCTCTTGAGCTTAGTCTCAACTCCTCCGGAGCTGCTGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

189

Amino Acids

20.52

Weight (kDa)

4.69

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	548
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	4 cut(s)	225, 238, 300, 361
AcsI	RAATTY	2 cut(s)	185, 319
AfaI	GTAC	2 cut(s)	298, 482
AfiI	CCNNNNNNNGG	3 cut(s)	93, 419, 492
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	395
AhlI	ACTAGT	2 cut(s)	236, 293
AjnI	CCWGG	2 cut(s)	129, 384
AluBI	AGCT	3 cut(s)	136, 532, 554
AluI	AGCT	3 cut(s)	136, 532, 554
Alw26I	GTCTC	2 cut(s)	216, 542
AlwI	GGATC	4 cut(s)	225, 238, 300, 361
Aor13HI	TCCGGA	1 cut(s)	548
ApeKI	GCWGC	2 cut(s)	50, 554
ApoI	RAATTY	2 cut(s)	185, 319
AsiGI	ACCGGT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	258
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	374, 434
AvaII	GGWCC	1 cut(s)	258
BaeI	ACNNNNGTAYC	2 cut(s)	472, 505
BamHI	GGATCC	1 cut(s)	230
BauI	CACGAG	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	62, 541
BccI	CCATC	2 cut(s)	245, 344
BciT130I	CCWGG	2 cut(s)	131, 386
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	216, 542
BcuI	ACTAGT	2 cut(s)	236, 293
BfaI	CTAG	2 cut(s)	237, 294
BisI	GCNGC	2 cut(s)	51, 555
BlsI	GCNGC	2 cut(s)	52, 556
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	3 cut(s)	55, 131, 386
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	232, 280
BmrFI	CCNGG	3 cut(s)	55, 131, 386
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	113
BpuEI	CTTGAG	2 cut(s)	140, 548
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	3 cut(s)	27, 433, 456
BsaWI	WCCGGW	3 cut(s)	93, 485, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 419, 492
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	548
BseBI	CCWGG	2 cut(s)	131, 386
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	27, 433, 456
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	3 cut(s)	93, 419, 492
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	3 cut(s)	44, 387, 535
BseXI	GCAGC	2 cut(s)	62, 541
BseYI	CCCAGC	2 cut(s)	15, 492
BshTI	ACCGGT	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	356
BsiSI	CCGG	4 cut(s)	54, 94, 486, 549
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	3 cut(s)	93, 419, 492
BsmAI	GTCTC	2 cut(s)	216, 542
BsmFI	GGGAC	1 cut(s)	509
Bso31I	GGTCTC	1 cut(s)	216
Bsp13I	TCCGGA	1 cut(s)	548
Bsp143I	GATC	8 cut(s)	112, 217, 230, 265, 305, 313, 353, 357
BspDI	ATCGAT	1 cut(s)	356
BspEI	TCCGGA	1 cut(s)	548
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	232, 280
BspPI	GGATC	4 cut(s)	225, 238, 300, 361
BspTNI	GGTCTC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	27, 433, 456
BssMI	GATC	8 cut(s)	112, 217, 230, 265, 305, 313, 353, 357
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	433
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	131, 386
Bst4CI	ACNGT	2 cut(s)	408, 422
BstDEI	CTNAG	3 cut(s)	119, 533, 567
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	8 cut(s)	115, 220, 233, 268, 308, 316, 356, 360
BstMAI	GTCTC	2 cut(s)	216, 542
BstMBI	GATC	8 cut(s)	112, 217, 230, 265, 305, 313, 353, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	2 cut(s)	131, 386
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	3 cut(s)	53, 129, 384
BstV1I	GCAGC	2 cut(s)	62, 541
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	2 cut(s)	230, 305
BstYI	RGATCY	2 cut(s)	230, 305
Bsu15I	ATCGAT	1 cut(s)	356
BsuTUI	ATCGAT	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	282, 404
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	1 cut(s)	470
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	258
ClaI	ATCGAT	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	297, 481
CspAI	ACCGGT	1 cut(s)	93
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	4 cut(s)	330, 361, 415, 562
CviJI	RGCY	9 cut(s)	14, 53, 136, 161, 339, 492, 532, 554, 566
CviKI_1	RGCY	9 cut(s)	14, 53, 136, 161, 339, 492, 532, 554, 566
CviQI	GTAC	2 cut(s)	297, 481
DdeI	CTNAG	3 cut(s)	119, 533, 567
DpnI	GATC	8 cut(s)	114, 219, 232, 267, 307, 315, 355, 359
DpnII	GATC	8 cut(s)	112, 217, 230, 265, 305, 313, 353, 357
Eco130I	CCWWGG	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	129, 384
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	4 cut(s)	333, 364, 418, 565
FaiI	YATR	8 cut(s)	144, 331, 342, 362, 416, 472, 474, 563
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	4 cut(s)	329, 360, 414, 561
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	51, 555
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	51, 555
FspBI	CTAG	2 cut(s)	237, 294
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	2 cut(s)	51, 555
GsaI	CCCAGC	2 cut(s)	19, 496
GsuI	CTGGAG	1 cut(s)	113
HapII	CCGG	4 cut(s)	54, 94, 486, 549
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	4 cut(s)	333, 364, 418, 565
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	4 cut(s)	54, 94, 486, 549
HphI	GGTGA	2 cut(s)	374, 434
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	80, 192, 457
Hpy188III	TCNNGA	5 cut(s)	164, 215, 361, 527, 549
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	410, 455
HpyCH4III	ACNGT	2 cut(s)	408, 422
HpyCH4IV	ACGT	2 cut(s)	195, 429
HpyCH4V	TGCA	2 cut(s)	418, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	3 cut(s)	119, 533, 567
HpySE526I	ACGT	2 cut(s)	195, 429
Hsp92II	CATG	4 cut(s)	333, 364, 418, 565
HspAI	GCGC	1 cut(s)	468
Kpn2I	TCCGGA	1 cut(s)	548
Kzo9I	GATC	8 cut(s)	112, 217, 230, 265, 305, 313, 353, 357
LmnI	GCTCC	2 cut(s)	133, 551
Lsp1109I	GCAGC	2 cut(s)	62, 541
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	2 cut(s)	237, 294
MaeII	ACGT	2 cut(s)	195, 429
MaeIII	GTNAC	2 cut(s)	6, 437
MalI	GATC	8 cut(s)	114, 219, 232, 267, 307, 315, 355, 359
MboI	GATC	8 cut(s)	112, 217, 230, 265, 305, 313, 353, 357
MboII	GAAGA	1 cut(s)	457
MflI	RGATCY	2 cut(s)	230, 305
MluCI	AATT	3 cut(s)	185, 223, 319
MlyI	GAGTC	1 cut(s)	94
MroI	TCCGGA	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	399
MspI	CCGG	4 cut(s)	54, 94, 486, 549
MspR9I	CCNGG	3 cut(s)	55, 131, 386
MvaI	CCWGG	2 cut(s)	131, 386
MwoI	GCNNNNNNNGC	1 cut(s)	563
NciI	CCSGG	1 cut(s)	55
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	8 cut(s)	112, 217, 230, 265, 305, 313, 353, 357
NlaIII	CATG	4 cut(s)	333, 364, 418, 565
NlaIV	GGNNCC	2 cut(s)	232, 280
PagI	TCATGA	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	129
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	52, 556
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp1406I	AACGTT	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	129, 384
PspEI	GGTNACC	1 cut(s)	437
PspFI	CCCAGC	2 cut(s)	15, 492
PspGI	CCWGG	2 cut(s)	129, 384
PspN4I	GGNNCC	2 cut(s)	232, 280
PspPI	GGNCC	1 cut(s)	258
PsuI	RGATCY	2 cut(s)	230, 305
RsaI	GTAC	2 cut(s)	298, 482
RsaNI	GTAC	2 cut(s)	297, 481
SatI	GCNGC	2 cut(s)	51, 555
Sau3AI	GATC	8 cut(s)	112, 217, 230, 265, 305, 313, 353, 357
Sau96I	GGNCC	1 cut(s)	258
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	55, 131, 386
SetI	ASST	8 cut(s)	138, 156, 198, 260, 432, 466, 534, 556
SfaNI	GCATC	1 cut(s)	51
SinI	GGWCC	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	155, 527
SmoI	CTYRAG	2 cut(s)	155, 527
SpeI	ACTAGT	2 cut(s)	236, 293
Sse9I	AATT	3 cut(s)	185, 223, 319
SspMI	CTAG	2 cut(s)	237, 294
StyD4I	CCNGG	3 cut(s)	53, 129, 384
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	408, 422
TaiI	ACGT	2 cut(s)	198, 432
TaqI	TCGA	2 cut(s)	216, 356
TaqII	GACCGA	1 cut(s)	97
TasI	AATT	3 cut(s)	185, 223, 319
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	123
TscAI	CASTG	2 cut(s)	289, 411
TseI	GCWGC	2 cut(s)	50, 554
TspDTI	ATGAA	1 cut(s)	377
TspRI	CASTG	2 cut(s)	289, 411
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	2 cut(s)	185, 319
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	2 cut(s)	237, 294
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.