Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007537.1

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

1523 .. 2161

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007537.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggaaccacgaactctgcaactaatggagttagaaacccagcaacaaatggaattacaagcccagcaaccaaccgaggagggaggaagcatccaagcagccgggagtagtgccaacaagcctatcaggccgaccaattaccggtggactcccacaccagatcaactaagaatcctccaggagctttactatgacaaggtgcttagatcctcaactccagagcagattcaagagatatgcctttatctgcaacaatatgggcagattgagggcaagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgagggaatatcggaacgttccggttggtggatctctcgatctcaattttggatccactagttctactagtactgaccgatccattgatctaaattttgggtcacgtgtcggctatggtgctgatggatcgatcatggaacaacgaggagaatatcaccaggagattgaaacccttccactattctccatgcatggtgaggacatcttgggcaacatgaagactacttccgagggaggtggcggctatggcggtggctctcgcatttcccttgagctcagcctcaactcctacggagatgcagacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

212

Amino Acids

23.79

Weight (kDa)

4.81

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	567, 576
AclI	AACGTT	1 cut(s)	342
AclWI	GGATC	6 cut(s)	201, 364, 372, 385, 399, 460
AcsI	RAATTY	1 cut(s)	418
AcvI	CACGTG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	141, 353
AflIII	ACRYGT	1 cut(s)	430
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	230, 494
AhlI	ACTAGT	2 cut(s)	383, 392
AjnI	CCWGG	2 cut(s)	177, 483
AluBI	AGCT	2 cut(s)	184, 601
AluI	AGCT	2 cut(s)	184, 601
Alw21I	GWGCWC	1 cut(s)	603
AlwI	GGATC	6 cut(s)	201, 364, 372, 385, 399, 460
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	418
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	281, 498
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	473, 533
BamHI	GGATCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	603
BauI	CACGAG	1 cut(s)	309
BbrPI	CACGTG	1 cut(s)	431
BbsI	GAAGAC	2 cut(s)	274, 551
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	2 cut(s)	179, 485
BcnI	CCSGG	1 cut(s)	103
BcuI	ACTAGT	2 cut(s)	383, 392
BfaI	CTAG	2 cut(s)	384, 393
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	99, 568
BlpI	GCTNAGC	1 cut(s)	602
BlsI	GCNGC	2 cut(s)	100, 569
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	3 cut(s)	103, 179, 485
BmiI	GGNNCC	3 cut(s)	6, 293, 379
BmrFI	CCNGG	3 cut(s)	103, 179, 485
BmsI	GCATC	2 cut(s)	99, 613
BpiI	GAAGAC	2 cut(s)	274, 551
BpmI	CTGGAG	2 cut(s)	161, 201
Bpu1102I	GCTNAGC	1 cut(s)	602
BpuEI	CTTGAG	2 cut(s)	287, 617
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	75, 555
BsaWI	WCCGGW	2 cut(s)	141, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 353
Bse118I	RCCGGY	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	179, 485
BseCI	ATCGAT	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	75, 555
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	141, 353
BseMII	CTCAG	1 cut(s)	616
BseRI	GAGGAG	2 cut(s)	92, 486
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	39, 63
BshFI	GGCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	141
BshVI	ATCGAT	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	3 cut(s)	102, 142, 347
BslI	CCNNNNNNNGG	2 cut(s)	141, 353
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	9 cut(s)	160, 206, 356, 364, 377, 404, 412, 452, 456
Bsp1720I	GCTNAGC	1 cut(s)	602
BspACI	CCGC	2 cut(s)	567, 576
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	615
BspDI	ATCGAT	1 cut(s)	455
BspLI	GGNNCC	3 cut(s)	6, 293, 379
BspPI	GGATC	6 cut(s)	201, 364, 372, 385, 399, 460
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	75, 555
BssMI	GATC	9 cut(s)	160, 206, 356, 364, 377, 404, 412, 452, 456
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	179, 485
BstBAI	YACGTR	1 cut(s)	431
BstDEI	CTNAG	4 cut(s)	167, 203, 602, 636
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	9 cut(s)	163, 209, 359, 367, 380, 407, 415, 455, 459
BstMBI	GATC	9 cut(s)	160, 206, 356, 364, 377, 404, 412, 452, 456
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 573, 632
BstNI	CCWGG	2 cut(s)	179, 485
BstSCI	CCNGG	3 cut(s)	101, 177, 483
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	274, 551
BstX2I	RGATCY	3 cut(s)	206, 356, 377
BstYI	RGATCY	3 cut(s)	206, 356, 377
Bsu15I	ATCGAT	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	130
BsuTUI	ATCGAT	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	141
CviAII	CATG	5 cut(s)	460, 514, 518, 541, 631
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	4 cut(s)	167, 203, 602, 636
DpnI	GATC	9 cut(s)	162, 208, 358, 366, 379, 406, 414, 454, 458
DpnII	GATC	9 cut(s)	160, 206, 356, 364, 377, 404, 412, 452, 456
Ecl136II	GAGCTC	1 cut(s)	601
Eco24I	GRGCYC	1 cut(s)	603
Eco53kI	GAGCTC	1 cut(s)	601
Eco72I	CACGTG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	177, 483
EcoT22I	ATGCAT	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	603
FaeI	CATG	5 cut(s)	463, 517, 521, 544, 634
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	5 cut(s)	459, 513, 517, 540, 630
Fnu4HI	GCNGC	2 cut(s)	99, 568
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	99, 568
FspBI	CTAG	2 cut(s)	384, 393
GluI	GCNGC	2 cut(s)	99, 568
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	2 cut(s)	161, 201
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	3 cut(s)	102, 142, 347
Hin1II	CATG	5 cut(s)	463, 517, 521, 544, 634
HinfI	GANTC	3 cut(s)	148, 171, 226
HpaII	CCGG	3 cut(s)	102, 142, 347
HphI	GGTGA	2 cut(s)	473, 533
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	339, 556
Hpy188III	TCNNGA	5 cut(s)	218, 230, 295, 311, 362
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	509
HpyCH4IV	ACGT	3 cut(s)	279, 342, 430
HpyCH4V	TGCA	4 cut(s)	19, 250, 517, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 573, 632
HpyF3I	CTNAG	4 cut(s)	167, 203, 602, 636
HpySE526I	ACGT	3 cut(s)	279, 342, 430
Hsp92II	CATG	5 cut(s)	463, 517, 521, 544, 634
Kzo9I	GATC	9 cut(s)	160, 206, 356, 364, 377, 404, 412, 452, 456
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	99, 613
MaeI	CTAG	2 cut(s)	384, 393
MaeII	ACGT	3 cut(s)	279, 342, 430
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	9 cut(s)	162, 208, 358, 366, 379, 406, 414, 454, 458
MboI	GATC	9 cut(s)	160, 206, 356, 364, 377, 404, 412, 452, 456
MboII	GAAGA	2 cut(s)	274, 556
MflI	RGATCY	3 cut(s)	206, 356, 377
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	4 cut(s)	53, 136, 370, 418
MlyI	GAGTC	1 cut(s)	142
Mph1103I	ATGCAT	1 cut(s)	519
MroXI	GAANNNNTTC	2 cut(s)	281, 498
MspI	CCGG	3 cut(s)	102, 142, 347
MspR9I	CCNGG	3 cut(s)	103, 179, 485
MvaI	CCWGG	2 cut(s)	179, 485
MwoI	GCNNNNNNNGC	3 cut(s)	127, 573, 632
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	9 cut(s)	160, 206, 356, 364, 377, 404, 412, 452, 456
NlaIII	CATG	5 cut(s)	463, 517, 521, 544, 634
NlaIV	GGNNCC	3 cut(s)	6, 293, 379
NmuCI	GTSAC	1 cut(s)	426
NsiI	ATGCAT	1 cut(s)	519
PdmI	GAANNNNTTC	2 cut(s)	281, 498
PfeI	GAWTC	2 cut(s)	171, 226
PfoI	TCCNGGA	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	100, 569
PleI	GAGTC	1 cut(s)	142
PmaCI	CACGTG	1 cut(s)	431
PmlI	CACGTG	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	177, 483
PspCI	CACGTG	1 cut(s)	431
PspFI	CCCAGC	2 cut(s)	39, 63
PspGI	CCWGG	2 cut(s)	177, 483
PspN4I	GGNNCC	3 cut(s)	6, 293, 379
PsuI	RGATCY	3 cut(s)	206, 356, 377
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	603
SatI	GCNGC	2 cut(s)	99, 568
Sau3AI	GATC	9 cut(s)	160, 206, 356, 364, 377, 404, 412, 452, 456
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	3 cut(s)	103, 179, 485
SduI	GDGCHC	1 cut(s)	603
SetI	ASST	8 cut(s)	186, 201, 282, 303, 345, 433, 565, 603
SfaNI	GCATC	2 cut(s)	99, 613
SmlI	CTYRAG	2 cut(s)	302, 596
SmoI	CTYRAG	2 cut(s)	302, 596
SpeI	ACTAGT	2 cut(s)	383, 392
Sse9I	AATT	4 cut(s)	53, 136, 370, 418
SsiI	CCGC	2 cut(s)	567, 576
SspMI	CTAG	2 cut(s)	384, 393
SstI	GAGCTC	1 cut(s)	603
StyD4I	CCNGG	3 cut(s)	101, 177, 483
TaiI	ACGT	3 cut(s)	282, 345, 433
TaqI	TCGA	2 cut(s)	363, 455
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	4 cut(s)	53, 136, 370, 418
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	2 cut(s)	171, 226
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	1 cut(s)	557
TspGWI	ACGGA	1 cut(s)	633
XapI	RAATTY	1 cut(s)	418
XmnI	GAANNNNTTC	2 cut(s)	281, 498
XspI	CTAG	2 cut(s)	384, 393
ZrmI	AGTACT	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.