Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001207.1

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

83874 .. 84561

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001207.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggaaccacgaactctgcaactaatggagttacaaacccagcaacaaatggaattacaagcccagcaaccaaccgaggagggaggaagcatccaagcagccgggagtagtgccaacactcctatcaggccgaccaataaccggtggactcccacaccagatcaactaagaatcctccaagagctttactacgacagggcgcttaagaacccaactccagagcagattcaagggatctgtctccatctgaaaccgtatgggcagatcgagaacaagaacgtcttcttttggttccagaacctcaaggctcgagaatatcaccaggagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactacttccgagggaggtagtggttatggcggtggctctcgcatttcccttgagctcagcctcaattcctacggagatgcagacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

158

Amino Acids

17.86

Weight (kDa)

4.91

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	141, 356
AflII	CTTAAG	1 cut(s)	203
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	230, 332
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	2 cut(s)	184, 439
AluI	AGCT	2 cut(s)	184, 439
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	309
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	98
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	281, 336
AspLEI	GCGC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	311, 371
AvaI	CYCGRG	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	441
BbsI	GAAGAC	2 cut(s)	274, 389
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	203
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	99
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	2 cut(s)	103, 323
BmeT110I	CYCGRG	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	6, 293
BmrFI	CCNGG	2 cut(s)	103, 323
BmsI	GCATC	2 cut(s)	99, 451
BpiI	GAAGAC	2 cut(s)	274, 389
BpmI	CTGGAG	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	2 cut(s)	287, 455
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	75, 393
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 356
Bse118I	RCCGGY	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	75, 393
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	141, 356
BseMII	CTCAG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	39, 63
BshFI	GGCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	2 cut(s)	102, 142
BslI	CCNNNNNNNGG	2 cut(s)	141, 356
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	3 cut(s)	160, 234, 264
Bsp1720I	GCTNAGC	1 cut(s)	440
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	453
BspLI	GGNNCC	2 cut(s)	6, 293
BspPI	GGATC	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	75, 393
BssMI	GATC	3 cut(s)	160, 234, 264
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	167, 440, 474
BstF5I	GGATG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	163, 237, 267
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	3 cut(s)	160, 234, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	101, 321
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	274, 389
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	90
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	141
CspAI	ACCGGT	1 cut(s)	141
CviAII	CATG	4 cut(s)	352, 356, 379, 469
CviJI	RGCY	9 cut(s)	62, 101, 130, 184, 308, 420, 439, 444, 473
CviKI_1	RGCY	9 cut(s)	62, 101, 130, 184, 308, 420, 439, 444, 473
DdeI	CTNAG	3 cut(s)	167, 440, 474
DpnI	GATC	3 cut(s)	162, 236, 266
DpnII	GATC	3 cut(s)	160, 234, 264
Ecl136II	GAGCTC	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	439
Eco88I	CYCGRG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	441
FaeI	CATG	4 cut(s)	355, 359, 382, 472
FaiI	YATR	6 cut(s)	258, 353, 357, 380, 411, 470
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	4 cut(s)	351, 355, 378, 468
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	2 cut(s)	102, 142
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	355, 359, 382, 472
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	3 cut(s)	148, 171, 226
HpaII	CCGG	2 cut(s)	102, 142
HphI	GGTGA	2 cut(s)	311, 371
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	249, 394
Hpy188III	TCNNGA	4 cut(s)	218, 268, 295, 311
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	19, 355, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	3 cut(s)	167, 440, 474
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	355, 359, 382, 472
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	3 cut(s)	160, 234, 264
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	99, 451
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	3 cut(s)	162, 236, 266
MboI	GATC	3 cut(s)	160, 234, 264
MboII	GAAGA	2 cut(s)	274, 394
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	2 cut(s)	53, 448
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	9 cut(s)	70, 73, 77, 185, 311, 355, 388, 392, 455
Mph1103I	ATGCAT	1 cut(s)	357
MroXI	GAANNNNTTC	2 cut(s)	281, 336
MseI	TTAA	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	2 cut(s)	102, 142
MspR9I	CCNGG	2 cut(s)	103, 323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	470
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	3 cut(s)	160, 234, 264
NlaIII	CATG	4 cut(s)	355, 359, 382, 472
NlaIV	GGNNCC	2 cut(s)	6, 293
NsiI	ATGCAT	1 cut(s)	357
PaeR7I	CTCGAG	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	281, 336
PfeI	GAWTC	2 cut(s)	171, 226
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	321
PspFI	CCCAGC	2 cut(s)	39, 63
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	6, 293
PsuI	RGATCY	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	160, 234, 264
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	103, 323
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	5 cut(s)	186, 282, 303, 403, 441
SfaNI	GCATC	2 cut(s)	99, 451
Sfr274I	CTCGAG	1 cut(s)	309
SlaI	CTCGAG	1 cut(s)	309
SmlI	CTYRAG	4 cut(s)	203, 302, 309, 434
SmoI	CTYRAG	4 cut(s)	203, 302, 309, 434
Sse9I	AATT	2 cut(s)	53, 448
SsiI	CCGC	1 cut(s)	414
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	101, 321
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	267, 310
TasI	AATT	2 cut(s)	53, 448
TfiI	GAWTC	2 cut(s)	171, 226
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	471
Vha464I	CTTAAG	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	309
XmnI	GAANNNNTTC	2 cut(s)	281, 336
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.