Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002011.1

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

21117 .. 21731

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002011.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggaggaaacaaccaagcagccgggacttgggagtagtgccaacacgcctatcaggccgaccaataaacggtggactcccacaccagatcaactaagaatcctccaggagctttactacgatagggctcttaagaacccaactccagagcagattcaagggatctgtctccatctgaaaccgtatgggcagatcgagaacaagaacgtcttctcttggttccagaacctcaaggctcgtgagaggcagaagttgagggaatttcagaacgttcgggttagtggatctctcgatctcaattttggatccactagttctactgatgatggtaggtccattgatctgaactttggttccactggttctacttgtactgacagatccattgatctaaattttgggtcatgtgtcggttatggtgttgatggatcgatcatggaacaacgaggagaatatcaccagaagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactacttccgagggaggtagcggctatggcggtggctctcatatttcccttgagctcagcctcaactcctacagagatgcagacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

204

Amino Acids

22.71

Weight (kDa)

5.6

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	543, 552
AclI	AACGTT	1 cut(s)	270
AclWI	GGATC	6 cut(s)	170, 292, 300, 313, 375, 436
AcsI	RAATTY	2 cut(s)	260, 394
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	3 cut(s)	29, 69, 494
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	158, 470
AhlI	ACTAGT	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
AluBI	AGCT	2 cut(s)	112, 577
AluI	AGCT	2 cut(s)	112, 577
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	6 cut(s)	170, 292, 300, 313, 375, 436
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	260, 394
Asp700I	GAANNNNTTC	2 cut(s)	209, 474
AspS9I	GGNCC	1 cut(s)	333
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	449, 509
AvaII	GGWCC	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	305
BanII	GRGCYC	2 cut(s)	130, 579
BauI	CACGAG	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	202, 527
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	3 cut(s)	180, 320, 419
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	173
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	592
BfrI	CTTAAG	1 cut(s)	131
BglI	GCCNNNNNGGC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	20, 544
BlpI	GCTNAGC	1 cut(s)	578
BlsI	GCNGC	2 cut(s)	21, 545
Bme1390I	CCNGG	2 cut(s)	24, 107
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	3 cut(s)	221, 307, 355
BmrFI	CCNGG	2 cut(s)	24, 107
BmsI	GCATC	1 cut(s)	589
BpiI	GAAGAC	2 cut(s)	202, 527
BpmI	CTGGAG	2 cut(s)	89, 129
Bpu1102I	GCTNAGC	1 cut(s)	578
BpuEI	CTTGAG	2 cut(s)	215, 593
BpuMI	CCSGG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 69, 494
Bse1I	ACTGG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	107
BseCI	ATCGAT	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	531
BseLI	CCNNNNNNNGG	3 cut(s)	29, 69, 494
BseMII	CTCAG	1 cut(s)	592
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	58
BshVI	ATCGAT	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	29, 69, 494
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	130, 579
Bsp1720I	GCTNAGC	1 cut(s)	578
BspACI	CCGC	2 cut(s)	543, 552
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	591
BspDI	ATCGAT	1 cut(s)	431
BspLI	GGNNCC	3 cut(s)	221, 307, 355
BspPI	GGATC	6 cut(s)	170, 292, 300, 313, 375, 436
BspTI	CTTAAG	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	72, 183
BstAFI	CTTAAG	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	95, 578, 612
BstMAI	GTCTC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 549, 608
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	22, 105
BstSFI	CTRYAG	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	202, 527
BstX2I	RGATCY	4 cut(s)	162, 284, 305, 380
BstYI	RGATCY	4 cut(s)	162, 284, 305, 380
Bsu15I	ATCGAT	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	58
BsuTUI	ATCGAT	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	333
ClaI	ATCGAT	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	6 cut(s)	405, 436, 490, 494, 517, 607
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	3 cut(s)	95, 578, 612
Ecl136II	GAGCTC	1 cut(s)	577
Eco24I	GRGCYC	2 cut(s)	130, 579
Eco47I	GGWCC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	577
EcoICRI	GAGCTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	495
EcoT38I	GRGCYC	2 cut(s)	130, 579
FaeI	CATG	6 cut(s)	408, 439, 493, 497, 520, 610
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	6 cut(s)	404, 435, 489, 493, 516, 606
Fnu4HI	GCNGC	2 cut(s)	20, 544
FriOI	GRGCYC	2 cut(s)	130, 579
Fsp4HI	GCNGC	2 cut(s)	20, 544
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	20, 544
GsuI	CTGGAG	2 cut(s)	89, 129
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	6 cut(s)	408, 439, 493, 497, 520, 610
HinfI	GANTC	3 cut(s)	76, 99, 154
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	449, 509
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	4 cut(s)	177, 267, 345, 532
Hpy188III	TCNNGA	5 cut(s)	146, 196, 223, 239, 290
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	2 cut(s)	72, 183
HpyCH4IV	ACGT	2 cut(s)	207, 270
HpyCH4V	TGCA	2 cut(s)	493, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 549, 608
HpyF3I	CTNAG	3 cut(s)	95, 578, 612
HpySE526I	ACGT	2 cut(s)	207, 270
Hsp92II	CATG	6 cut(s)	408, 439, 493, 497, 520, 610
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	36, 40, 92, 99, 119, 159, 236, 345, 473
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	207, 270
MboII	GAAGA	3 cut(s)	202, 475, 532
MflI	RGATCY	4 cut(s)	162, 284, 305, 380
MhlI	GDGCHC	2 cut(s)	130, 579
MluCI	AATT	3 cut(s)	260, 298, 394
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	9 cut(s)	113, 237, 239, 249, 440, 493, 526, 530, 593
Mph1103I	ATGCAT	1 cut(s)	495
MroXI	GAANNNNTTC	2 cut(s)	209, 474
MseI	TTAA	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	24, 107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	55, 549, 608
NciI	CCSGG	1 cut(s)	24
NlaIII	CATG	6 cut(s)	408, 439, 493, 497, 520, 610
NlaIV	GGNNCC	3 cut(s)	221, 307, 355
NsiI	ATGCAT	1 cut(s)	495
PdmI	GAANNNNTTC	2 cut(s)	209, 474
PfeI	GAWTC	2 cut(s)	99, 154
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	21, 545
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	579
Psp1406I	AACGTT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	221, 307, 355
PspPI	GGNCC	1 cut(s)	333
PsuI	RGATCY	4 cut(s)	162, 284, 305, 380
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	20, 544
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	24, 107
SduI	GDGCHC	2 cut(s)	130, 579
SetI	ASST	7 cut(s)	114, 210, 231, 273, 335, 541, 579
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	592
SinI	GGWCC	1 cut(s)	333
SmlI	CTYRAG	3 cut(s)	131, 230, 572
SmoI	CTYRAG	3 cut(s)	131, 230, 572
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	3 cut(s)	260, 298, 394
SsiI	CCGC	2 cut(s)	543, 552
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	22, 105
TaaI	ACNGT	2 cut(s)	72, 183
TaiI	ACGT	2 cut(s)	210, 273
TaqI	TCGA	3 cut(s)	195, 291, 431
TasI	AATT	3 cut(s)	260, 298, 394
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	99, 154
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	533
TspRI	CASTG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	2 cut(s)	260, 394
XmnI	GAANNNNTTC	2 cut(s)	209, 474
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.