Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008827

Physical Location & Seq

Genomic Coordinates Reverse (-)

6205428 .. 6207283

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46788

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGCTTGTCCTGAGCAAAGATTCTAAATTTTCTCATGAGAAGACTGTTCAATCCATAAATTCGGGAAAGAGCCAGAGTGCAAGCCACAGGTCATTAGCATCTTCATCCTCTGATGAGGTACATCCTGAGAGAACCCCGGGAATTGAATATAGTGTTTTCTCAGATAAAAGGTTTGATGATGATGAATTGCCCGGCAGTGAACCATCTCCGAGGCTGAAAAAATCTGGATTAGATACAAGTGCCAAGGATGATTTACCTCAAACAGTGAAAGACAGTGAGGAATGTAGTTGTGTAAGTGATACTGACAATGAGTTGTTGGCCTTTGGGGTCTTGAAAGGTGGCCTTCGGAACAAGGGTTATAGGCATCCACCATATAATCGGAATCCATCAGGCAATGCTTTTTTGGGCAAACAAATTACTCAAGATACTCCAACAGTCAGGACTTCCGATGTTTCTCATACGTCTATTGAAGAGCCATATAGCCGGAAAGGGAGCACTAAGCTAAATAAGGAACAAAGCACTAAAACCCCAGTCACACATGTCACTGCTGATGATGATTCTTCAGAGGATGAACTCTCACATGAAACTCTAAGCAGTAGTCGCCAAGACCTGTACAATCAGAAATCGGTCTCTCGAGTAGTACATGATGATTCTTCAGAGGATGAACTCTCACATGAAACTCTTAGCAATAGTCGCCAAGACCTGTCCCATCATAAATCGGTATCCCAAGGAAAGACGAGCTCAACGTCTGCATTTTTCTTTAATTCAGAGGATAGTGAGGCTGAGGAAGATGTTCCTATAAAGATTTCCACCACCATTGCTCGTCCAAGTTCAAAATTTTCTAGAAGGACACAACCCTCTTCTTCAAATTCTGTTAGAAGTTCTAGCATAAGGACAACAGTTGTTCCTGATGCACCAAGGACTTCAGACTATGGAAAATCCTCTTCAAGAAGTTCCAAAGACGCTGAAACTCTACCAGAGCCCTCAAGAAGTCAGGATTGGCAGAGACCTATAGAACAAACAAGTTCTTATTCAATTCCAGAATCCAAGAAGACTGGGACATCAGTCAATGGAAATTCCTCCTCAAGAAGTTCTTATTCCACTGAAACTCCACCAAGTGCCTCATCCCAGACCAAGCGCTCAGAACGTTTGGCAAGTCAGGAGTGGCGTAGACCAGTAGAACAAGCAGCACCTAAACCAATACCAGAATCTAAGAGGTCCTCGCGTGTGGAGATTTCAAACTCATTTGCAAGGGAGGAATCATCCAATACTACAATGACTGTAAGATCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

431

Amino Acids

47.43

Weight (kDa)

6.07

Isoelectric Point (pI)

73.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008827)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06910 FvH4_1g06910 FvH4_1g06910
malus_domestica	MD02G1073500.v1.1 MD15G1202900.v1.1
prunus_persica	Prupe.7G214200_v2.0.a1 Prupe.7G214200_v2.0.a1
pyrus_communis	pycom02g05790 pycom15g18020
rosa_chinensis	RchiOBHm_Chr2g0092801 RchiOBHm_Chr2g0092861
rosa_laevigata	RLG00000016336
rosa_multiflora	Rmu_sc0003262.1_g000014
rosa_roxburghii	Rroxscaffold_2G00148810
rosa_rugosa	Rorug02G0029300 Rorug02G0029400
rosa_samantha	Rh2AG075200 Rh2CG078300 Rh2CG078800 Rh2DG073200 Rh2DG073600 Rh2DG073800
rosa_wichuraiana	Rw2G007080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1171
AccII	CGCG	1 cut(s)	1225
AclI	AACGTT	1 cut(s)	1147
AcsI	RAATTY	5 cut(s)	26, 58, 836, 868, 1075
AcuI	CTGAAG	3 cut(s)	546, 639, 909
AdeI	CACNNNGTG	1 cut(s)	1118
AfaI	GTAC	3 cut(s)	120, 614, 642
AfeI	AGCGCT	1 cut(s)	1139
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	9 cut(s)	50, 146, 334, 470, 834, 867, 948, 1035, 1239
AjuI	GAANNNNNNNTTGG	2 cut(s)	982, 1014
AluBI	AGCT	2 cut(s)	502, 741
AluI	AGCT	2 cut(s)	502, 741
Alw21I	GWGCWC	2 cut(s)	497, 743
Alw26I	GTCTC	2 cut(s)	634, 1000
Ama87I	CYCGRG	2 cut(s)	136, 633
Aor51HI	AGCGCT	1 cut(s)	1139
AoxI	GGCC	2 cut(s)	318, 340
ApeKI	GCWGC	1 cut(s)	1187
ApoI	RAATTY	5 cut(s)	26, 58, 836, 868, 1075
Asp700I	GAANNNNTTC	1 cut(s)	792
AspLEI	GCGC	1 cut(s)	1140
AspS9I	GGNCC	1 cut(s)	1218
AsuC2I	CCSGG	3 cut(s)	137, 138, 192
AvaI	CYCGRG	2 cut(s)	136, 633
AvaII	GGWCC	1 cut(s)	1218
BanII	GRGCYC	2 cut(s)	743, 984
BbsI	GAAGAC	2 cut(s)	47, 1058
Bbv12I	GWGCWC	2 cut(s)	497, 743
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	1 cut(s)	1199
BccI	CCATC	3 cut(s)	211, 394, 717
BciVI	GTATCC	1 cut(s)	733
BcnI	CCSGG	3 cut(s)	137, 138, 192
BcoDI	GTCTC	2 cut(s)	634, 1000
BfaI	CTAG	2 cut(s)	843, 885
BfmI	CTRYAG	1 cut(s)	1011
BfoI	RGCGCY	1 cut(s)	1141
BfuI	GTATCC	1 cut(s)	733
BisI	GCNGC	1 cut(s)	1188
BlsI	GCNGC	1 cut(s)	1189
Bme1390I	CCNGG	3 cut(s)	137, 138, 192
Bme18I	GGWCC	1 cut(s)	1218
BmeT110I	CYCGRG	2 cut(s)	136, 633
BmgT120I	GGNCC	1 cut(s)	1218
BmrFI	CCNGG	3 cut(s)	137, 138, 192
BmrI	ACTGGG	2 cut(s)	524, 1065
BmsI	GCATC	3 cut(s)	107, 373, 901
BmuI	ACTGGG	2 cut(s)	524, 1065
BoxI	GACNNNNGTC	1 cut(s)	1064
BpiI	GAAGAC	2 cut(s)	47, 1058
Bpu10I	CCTNAGC	2 cut(s)	11, 783
BpuEI	CTTGAG	3 cut(s)	405, 970, 1069
BpuMI	CCSGG	3 cut(s)	137, 138, 192
BsaI	GGTCTC	2 cut(s)	634, 1000
BsaJI	CCNNGG	6 cut(s)	135, 136, 209, 243, 727, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	1093, 1123
Bse1I	ACTGG	3 cut(s)	530, 1060, 1175
Bse3DI	GCAATG	2 cut(s)	400, 816
BseDI	CCNNGG	6 cut(s)	135, 136, 209, 243, 727, 917
BseGI	GGATG	8 cut(s)	104, 121, 253, 364, 574, 667, 1124, 1262
BseMI	GCAATG	2 cut(s)	400, 816
BseMII	CTCAG	4 cut(s)	117, 174, 774, 1155
BseNI	ACTGG	3 cut(s)	530, 1060, 1175
BseRI	GAGGAG	1 cut(s)	1072
BseXI	GCAGC	1 cut(s)	1199
Bsh1236I	CGCG	1 cut(s)	1225
BshFI	GGCC	2 cut(s)	320, 342
BsiHKAI	GWGCWC	2 cut(s)	497, 743
BsiHKCI	CYCGRG	2 cut(s)	136, 633
BsiSI	CCGG	3 cut(s)	137, 192, 484
BslFI	GGGAC	2 cut(s)	691, 1072
BsmAI	GTCTC	2 cut(s)	634, 1000
BsmFI	GGGAC	2 cut(s)	691, 1072
BsnI	GGCC	2 cut(s)	320, 342
Bso31I	GGTCTC	2 cut(s)	634, 1000
BsoBI	CYCGRG	2 cut(s)	136, 633
Bsp1286I	GDGCHC	3 cut(s)	497, 743, 984
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	1 cut(s)	1286
BspANI	GGCC	2 cut(s)	320, 342
BspCNI	CTCAG	4 cut(s)	118, 173, 775, 1154
BspFNI	CGCG	1 cut(s)	1225
BspHI	TCATGA	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	465
BspTNI	GGTCTC	2 cut(s)	634, 1000
BsrDI	GCAATG	2 cut(s)	400, 816
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	3 cut(s)	530, 1060, 1175
BssECI	CCNNGG	6 cut(s)	135, 136, 209, 243, 727, 917
BssMI	GATC	1 cut(s)	1286
BssT1I	CCWWGG	3 cut(s)	243, 727, 917
Bst4CI	ACNGT	6 cut(s)	46, 265, 275, 436, 901, 1282
Bst6I	CTCTTC	3 cut(s)	465, 865, 949
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	9 cut(s)	11, 126, 160, 498, 590, 683, 783, 1141, 1212
BstF5I	GGATG	8 cut(s)	104, 121, 253, 364, 574, 667, 1124, 1262
BstFNI	CGCG	1 cut(s)	1225
BstH2I	RGCGCY	1 cut(s)	1141
BstHHI	GCGC	1 cut(s)	1140
BstKTI	GATC	1 cut(s)	1289
BstMAI	GTCTC	2 cut(s)	634, 1000
BstMBI	GATC	1 cut(s)	1286
BstMWI	GCNNNNNNNGC	2 cut(s)	600, 693
BstNSI	RCATGY	1 cut(s)	542
BstPAI	GACNNNNGTC	1 cut(s)	1064
BstSCI	CCNGG	3 cut(s)	135, 136, 190
BstSFI	CTRYAG	1 cut(s)	1011
BstUI	CGCG	1 cut(s)	1225
BstV1I	GCAGC	1 cut(s)	1199
BstV2I	GAAGAC	2 cut(s)	47, 1058
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	320, 342
BtsCI	GGATG	8 cut(s)	104, 121, 253, 364, 574, 667, 1124, 1262
BtsI	GCAGTG	2 cut(s)	202, 543
BtsIMutI	CAGTG	5 cut(s)	202, 270, 280, 543, 1101
Cac8I	GCNNGC	1 cut(s)	82
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	1 cut(s)	1140
Cfr13I	GGNCC	1 cut(s)	1218
Cfr9I	CCCGGG	1 cut(s)	136
CseI	GACGC	1 cut(s)	971
Csp6I	GTAC	3 cut(s)	119, 613, 641
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviAII	CATG	5 cut(s)	35, 539, 581, 644, 674
CviQI	GTAC	3 cut(s)	119, 613, 641
DdeI	CTNAG	9 cut(s)	11, 126, 160, 498, 590, 683, 783, 1141, 1212
DpnI	GATC	1 cut(s)	1288
DpnII	GATC	1 cut(s)	1286
DraIII	CACNNNGTG	1 cut(s)	1118
Eam1104I	CTCTTC	3 cut(s)	465, 865, 949
EarI	CTCTTC	3 cut(s)	465, 865, 949
Ecl136II	GAGCTC	1 cut(s)	741
Eco130I	CCWWGG	3 cut(s)	243, 727, 917
Eco24I	GRGCYC	2 cut(s)	743, 984
Eco31I	GGTCTC	2 cut(s)	634, 1000
Eco47I	GGWCC	1 cut(s)	1218
Eco47III	AGCGCT	1 cut(s)	1139
Eco53kI	GAGCTC	1 cut(s)	741
Eco57I	CTGAAG	3 cut(s)	546, 639, 909
Eco88I	CYCGRG	2 cut(s)	136, 633
EcoICRI	GAGCTC	1 cut(s)	741
EcoO109I	RGGNCCY	1 cut(s)	1218
EcoT14I	CCWWGG	3 cut(s)	243, 727, 917
EcoT38I	GRGCYC	2 cut(s)	743, 984
ErhI	CCWWGG	3 cut(s)	243, 727, 917
FaeI	CATG	5 cut(s)	38, 542, 584, 647, 677
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 1078, 1110
FaqI	GGGAC	2 cut(s)	691, 1072
FatI	CATG	5 cut(s)	34, 538, 580, 643, 673
FblI	GTMKAC	1 cut(s)	1171
Fnu4HI	GCNGC	1 cut(s)	1188
FokI	GGATG	8 cut(s)	91, 108, 260, 351, 581, 674, 1111, 1249
FriOI	GRGCYC	2 cut(s)	743, 984
Fsp4HI	GCNGC	1 cut(s)	1188
FspBI	CTAG	2 cut(s)	843, 885
GlaI	GCGC	1 cut(s)	1139
GluI	GCNGC	1 cut(s)	1188
HaeII	RGCGCY	1 cut(s)	1141
HaeIII	GGCC	2 cut(s)	320, 342
HapII	CCGG	3 cut(s)	137, 192, 484
HgaI	GACGC	1 cut(s)	971
HhaI	GCGC	1 cut(s)	1140
Hin1II	CATG	5 cut(s)	38, 542, 584, 647, 677
Hin6I	GCGC	1 cut(s)	1138
HinP1I	GCGC	1 cut(s)	1138
HinfI	GANTC	7 cut(s)	20, 382, 557, 650, 1043, 1208, 1259
HpaII	CCGG	3 cut(s)	137, 192, 484
Hpy166II	GTNNAC	2 cut(s)	200, 1172
Hpy8I	GTNNAC	2 cut(s)	200, 1172
HpyAV	CCTTC	2 cut(s)	353, 840
HpyCH4III	ACNGT	6 cut(s)	46, 265, 275, 436, 901, 1282
HpyCH4IV	ACGT	3 cut(s)	461, 746, 1147
HpyCH4V	TGCA	4 cut(s)	80, 752, 914, 1250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	600, 693
HpyF3I	CTNAG	9 cut(s)	11, 126, 160, 498, 590, 683, 783, 1141, 1212
HpySE526I	ACGT	3 cut(s)	461, 746, 1147
Hsp92II	CATG	5 cut(s)	38, 542, 584, 647, 677
HspAI	GCGC	1 cut(s)	1138
Kzo9I	GATC	1 cut(s)	1286
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	492
Lsp1109I	GCAGC	1 cut(s)	1199
LweI	GCATC	3 cut(s)	107, 373, 901
MaeI	CTAG	2 cut(s)	843, 885
MaeII	ACGT	3 cut(s)	461, 746, 1147
MaeIII	GTNAC	2 cut(s)	532, 541
MalI	GATC	1 cut(s)	1288
MboI	GATC	1 cut(s)	1286
MhlI	GDGCHC	3 cut(s)	497, 743, 984
MmeI	TCCRAC	1 cut(s)	455
MroXI	GAANNNNTTC	1 cut(s)	792
MseI	TTAA	1 cut(s)	762
MspI	CCGG	3 cut(s)	137, 192, 484
MspR9I	CCNGG	3 cut(s)	137, 138, 192
MvnI	CGCG	1 cut(s)	1225
MwoI	GCNNNNNNNGC	2 cut(s)	600, 693
NciI	CCSGG	3 cut(s)	137, 138, 192
NdeII	GATC	1 cut(s)	1286
NlaIII	CATG	5 cut(s)	38, 542, 584, 647, 677
NmuCI	GTSAC	2 cut(s)	532, 541
NspI	RCATGY	1 cut(s)	542
PaeR7I	CTCGAG	1 cut(s)	633
PagI	TCATGA	1 cut(s)	34
PciI	ACATGT	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	743
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	7 cut(s)	20, 382, 557, 650, 1043, 1208, 1259
PkrI	GCNGC	1 cut(s)	1189
PpuMI	RGGWCCY	1 cut(s)	1218
PscI	ACATGT	1 cut(s)	538
PshAI	GACNNNNGTC	1 cut(s)	1064
Psp124BI	GAGCTC	1 cut(s)	743
Psp1406I	AACGTT	1 cut(s)	1147
Psp5II	RGGWCCY	1 cut(s)	1218
PspPI	GGNCC	1 cut(s)	1218
PspPPI	RGGWCCY	1 cut(s)	1218
RsaI	GTAC	3 cut(s)	120, 614, 642
RsaNI	GTAC	3 cut(s)	119, 613, 641
SacI	GAGCTC	1 cut(s)	743
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	1 cut(s)	1188
Sau3AI	GATC	1 cut(s)	1286
Sau96I	GGNCC	1 cut(s)	1218
ScrFI	CCNGG	3 cut(s)	137, 138, 192
SduI	GDGCHC	3 cut(s)	497, 743, 984
SfaNI	GCATC	3 cut(s)	107, 373, 901
SfcI	CTRYAG	1 cut(s)	1011
Sfr274I	CTCGAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	1218
SlaI	CTCGAG	1 cut(s)	633
SmaI	CCCGGG	1 cut(s)	138
SmlI	CTYRAG	4 cut(s)	420, 633, 985, 1084
SmoI	CTYRAG	4 cut(s)	420, 633, 985, 1084
SspMI	CTAG	2 cut(s)	843, 885
SstI	GAGCTC	1 cut(s)	743
StyD4I	CCNGG	3 cut(s)	135, 136, 190
StyI	CCWWGG	3 cut(s)	243, 727, 917
TaaI	ACNGT	6 cut(s)	46, 265, 275, 436, 901, 1282
TaiI	ACGT	3 cut(s)	464, 749, 1150
TaqI	TCGA	1 cut(s)	634
TaqII	GACCGA	1 cut(s)	616
TatI	WGTACW	2 cut(s)	612, 640
TfiI	GAWTC	7 cut(s)	20, 382, 557, 650, 1043, 1208, 1259
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TscAI	CASTG	5 cut(s)	202, 270, 280, 550, 1108
TseFI	GTSAC	2 cut(s)	532, 541
TseI	GCWGC	1 cut(s)	1187
Tsp45I	GTSAC	2 cut(s)	532, 541
TspDTI	ATGAA	6 cut(s)	93, 198, 585, 597, 678, 690
TspMI	CCCGGG	1 cut(s)	136
TspRI	CASTG	5 cut(s)	202, 270, 280, 550, 1108
VpaK11BI	GGWCC	1 cut(s)	1218
XapI	RAATTY	5 cut(s)	26, 58, 836, 868, 1075
XbaI	TCTAGA	1 cut(s)	842
XceI	RCATGY	1 cut(s)	542
XhoI	CTCGAG	1 cut(s)	633
XmaI	CCCGGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	1171
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	2 cut(s)	843, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.