Rh2CG078800

Regulator of Vps4 activity in the MVB pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008827
Physical Location & Seq
Reverse (-)
6452471 .. 6456587
4117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG078800.1

Sequence Viewer

Length: 3330 bp
ATGGTTGAATCGCAGAAAAACTGCCCAATTGATCTGAAGGAAGCAGTATCAAGTGTAATTTTTGCATCTCCTAGATGTGCGGACGTACCAGAACTCATGGATATCCGCAAGCACTTCACAGCAAAATACGGAAAGGAGTTCGTTTCTGCAGCTGTTGAACTGCGGCCGGATAGTGGTGTAAGCCGCATGTTAATAGAGAAATTATCTACCAAATCACCTGATGGCCCTACCAAGATGAAAATTTTGGCTGCAATTGCAGAGGAACATAATGTCAAATGGGATCCTGAGGCATTTGAAGAGAAGCCTCCTGAGGACCTGCTGAATGGACCAAATACGTTTGGAATGGCCAGTATGGATTCTGCTCCACCTCCACCTACTCATGATGTCAGGGGATCTCCTAATGTCCAAGTTCCGCCTAATAGCATGGCCAGTAAAGCTCATGTGGAACCTCCCTCTGGTCCACCTCCACCTGATCAACCTCCAATTGCTCAAGTTCCACGCAGAAATTATGAGTATCACGATGGACCTATGAATTCTAATGAGCAGAATGCAAGATCATCACCTCACTTGGAGGATTCTGATTCTACAAATGTTTCTGCCAACAAAGCAACCACATCTGCCAAATTTCATCCAGAAACGACATCTTCAGAAACCAGAAGCAGTCGAATGGAAATGCATGTATTTCCTGGGGATGAAAGTTCTTCGGGCAGGCAGAATTGGAATATGCAATTTAAGGATGCTGCATCTGCAGCACAGGCAGCTGCTGAATCAGCAGAACTAGCAGGCATGGCAGCCAGAGCAGCTGCAGAACTCTCGAGGCAATATTCATCTGAAATGCACAATAAAAGTAATCAGTCAGCCTCTGTGCCAACTAATTCAAGTTCCATGAACAATGACCATTTGGGGAATAGTCTCCAGACGGCAGATCGGTATCCTCAAAAGAAGTCACCTGAACGTCGTGACATTTTAGATAAGGCGAGCATGAAGAGACAGTCTGGTAATTCTGAGGATATGCATGCAAGTGAGATGCAAACTGCTATCAAACCTGAGAATATTCCTTATTTTGGAGATATAAGATCTGAAAAGAAATCTAGCAGGACTTCCTCCCCATCTAATTCAAGTGTTGGCAGCGATCATCAGGAAGACGTTTTGAAAGAGGATGATCATATTAATTACTTTGCAGATCTGGGTACTGGAAAACAATCTATCAGGTCTTCCTCTCCTTCTCATTCGGGACATTTTAGTAACAATCACGAAAATTTCGCTAGTGTTTCTGGTGAGGGTTCTTTTGTTAGTGATGTTAACATCCATCAAAGCACAATTGGAATGAATTCTGAGGGAAATGCTCCTCTGGTTTTTGATGATTCTGGTTCAGACGATGATAACTACAAGGGACAAGAATCAAGTTTGTTTTTTTCTTCTCCTGCTAGAAATTCATTTCCTTCAGCTAGTTTAGATCCTTGGAGCTTTGAGCAAAAGAGAGATGAGGTACCATTGAAGTCCGTTTCACCATTACGTTCTTCATCAGTGCAGCACTCCCTTCCCATCTTTTCTGAAGGTTTGACAGGTTCTACTGTCCCTTCGGAACCAAATGACTTCGTGCCTGTTACTTTTGATGCTTCAGATGGCCCAAGTTCAGACAGTGAGGAGGAGTTGGACACGTCGATGCTTGTCCTGAGCAAAGATTCTAAATTTTCTCATGAGAAGACTGTTCAATCCATAAATTCGGGAAAAAGCCAGAGTGCAAGCTACAAGTCATTAGCATCTTCATCCTCTGATGAGGTACATCCTGAGAGAACCCAGGGAATTGAATATAGTGTTTTCTCAGATAAAAGGTTTGATGATGATGAATTGCCCGGTAGTGAACCATCTCCGAGGCTGAAAAAATCTGGATTAGATACAAGTGCCAAGGATGATTTACCTCAAACAGTGAAAGACAGTGAGGAATGTAGTTGTGTAAGTGATACTGACAATGAGTTGTTGGCCTTTGGGGTCTTGAAAGGCGGCCTTCGGAACAAGGGTTATAGGTATCCACCATATAATCTGAATCCATCAGGCAATGCTTTTTTGGGCAAACAAATTACTCAAGATGATCCAACAGTCAGGACTTCCGATGTTTCTCATACGCCTATTGATGAGCCATATAGCCTGAAAGGAAGCACTAAGCTAAATAAGGAACAAAGCACTAAAACCCCAGTCACACATGTCACTCCTGATGATGATTCTTCAGAGGATGAACTGTCACATCAAACTCTAAGCAGTAGTCGCCAAGACTTGTACAATCAGAAATCGGTCTCTCGAGTAGTACATGATGATTCTTCAGAGGATGAACTCTCACATGAAACTCTTAGCAATAGTCGCCAAGACCTGTACCATCATAAATCGGTATCCCAAGGAAAGACAAGCTCAACGTCTGCATTTTTCTTTAATTCAGAGGATAGTGAGGCTGAGGAAGATGTTCCTAGAAAGATTTCCACCACCATTGCTCGTCCAAGTTCAAAATTTTCTAGAAGGACACAACCCTCTTCTTCAAATTCTGTTAGAAGTTCTAGCATAAGGACAACAGTTGTTCCTGATGCACCAAGGACTTCAGACTATGGAAAATCCTCTTCAAGAAGTTCCAATGACGCTGAAACTCTACCAGAGCCCTCAAGAAGTCAGGATTGGCAGAGACCTATAGAACAAACAAGTTCTTATTCAATTCCAGAATCCAAGAAGACTGGGACATCAGTCAATGGAAATTCCTCCTCAAGAAGTTCTTATGCCACTGAAACTCTACCAAGTGCCTCATCCCAGACCAAGCGCTCAGACCGTTTGGCAAGTCAGGAGTGGCGTAGACCAATAGAACAAGCAGCACCTAAACCAATACCAGAATCTAAGAGGTCCTCGCGTGTGGAGACTTCAAACTTATTTCCAAGGGAGGAATCATCCAATACTCCAATGACTGTAAGATCAGAGAGAACTGAAGCTACTGAAACTTCAAAGTCCTCGGGTTCAAAGTCATTTGGAAGAGAACAATCATCTAATCCTCCAAAGATTGAAAGATCAGAAAGCAGCGAAAGTTCAAAGTCATTTGCAAGAGACCAATCGTCCAATCTTCCTGCAAAGGTTGTAAGATCACAGAGAAGTGACCCTTCAAAGTTCTCTGCTCCGAAGTCATTTACAAGGGACCAAACTTCCAATCCTCCTCCAAAGATTGTAAGATCAGAGAGCGCTGAAACTCCGAAGTCCTCTTCTTCAGTGGGGAAGGCTTCTCATGTCCACCCGAAGCTTCCCGACTCTGATGACTTGTTTGCCAAGTTTACAGCCCTCAAGCAGAATCGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Ist1

Protein Analysis

1109

Amino Acids

121.15

Weight (kDa)

5.53

Isoelectric Point (pI)

69.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ist1 PF03398 2 - 92 4.4e-28 Regulator of Vps4 activity in the MVB pathway
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 1489
AccB1I GGYRCC 1 cut(s) 1489
AccI GTMKAC 1 cut(s) 2836
AccII CGCG 1 cut(s) 2890
AciI CCGC 6 cut(s) 80, 106, 163, 184, 413, 2004
AclWI GGATC 5 cut(s) 275, 288, 400, 1451, 2087
AcoI YGGCCR 3 cut(s) 164, 345, 426
AfaI GTAC 7 cut(s) 87, 1192, 1491, 1785, 2279, 2307, 2372
AfeI AGCGCT 2 cut(s) 2804, 3214
AfiI CCNNNNNNNGG 3 cut(s) 173, 455, 1064
AflIII ACRYGT 2 cut(s) 1659, 2203
AhdI GACNNNNNGTC 1 cut(s) 3088
AjiI CACGTC 1 cut(s) 1662
AjnI CCWGG 2 cut(s) 685, 1800
AjuI GAANNNNNNNTTGG 2 cut(s) 2647, 2679
Alw26I GTCTC 6 cut(s) 917, 982, 2299, 2665, 2891, 3075
AlwI GGATC 5 cut(s) 275, 288, 400, 1451, 2087
AlwNI CAGNNNCTG 2 cut(s) 764, 863
Ama87I CYCGRG 3 cut(s) 814, 2298, 2989
Aor51HI AGCGCT 2 cut(s) 2804, 3214
AoxI GGCC 7 cut(s) 164, 223, 345, 426, 1627, 1983, 2005
AseI ATTAAT 1 cut(s) 1170
Asp700I GAANNNNTTC 3 cut(s) 1330, 2457, 2470
Asp718I GGTACC 1 cut(s) 1489
AspLEI GCGC 2 cut(s) 2805, 3215
AspS9I GGNCC 8 cut(s) 224, 313, 326, 458, 524, 1628, 2883, 3169
AsuC2I CCSGG 1 cut(s) 1857
AsuHPI GGTGA 5 cut(s) 207, 552, 939, 1289, 1500
AvaI CYCGRG 3 cut(s) 814, 2298, 2989
AvaII GGWCC 6 cut(s) 313, 326, 458, 524, 2883, 3169
AxyI CCTNAGG 2 cut(s) 285, 309
BalI TGGCCA 2 cut(s) 347, 428
BamHI GGATCC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 1489
BanII GRGCYC 1 cut(s) 2649
BbsI GAAGAC 4 cut(s) 1149, 1206, 1712, 2723
BbvCI CCTCAGC 1 cut(s) 2448
BccI CCATC 9 cut(s) 215, 515, 1117, 1317, 1553, 1619, 1876, 2059, 2382
BceAI ACGGC 1 cut(s) 936
BcgI CGANNNNNNTGC 2 cut(s) 795, 829
BciT130I CCWGG 2 cut(s) 687, 1802
BciVI GTATCC 3 cut(s) 942, 2040, 2398
BclI TGATCA 2 cut(s) 472, 1162
BcnI CCSGG 1 cut(s) 1857
BcoDI GTCTC 6 cut(s) 917, 982, 2299, 2665, 2891, 3075
BfaI CTAG 9 cut(s) 72, 779, 1092, 1266, 1428, 1449, 2463, 2508, 2550
BfmI CTRYAG 4 cut(s) 147, 747, 804, 2676
BfoI RGCGCY 2 cut(s) 2806, 3216
BfuAI ACCTGC 1 cut(s) 324
BfuI GTATCC 3 cut(s) 942, 2040, 2398
BglII AGATCT 2 cut(s) 1076, 1183
Bme1390I CCNGG 3 cut(s) 687, 1802, 1857
Bme18I GGWCC 6 cut(s) 313, 326, 458, 524, 2883, 3169
BmeRI GACNNNNNGTC 1 cut(s) 3088
BmeT110I CYCGRG 3 cut(s) 814, 2298, 2989
BmgBI CACGTC 1 cut(s) 1662
BmgT120I GGNCC 8 cut(s) 224, 313, 326, 458, 524, 1628, 2883, 3169
BmiI GGNNCC 5 cut(s) 282, 447, 1491, 1587, 3170
BmrFI CCNGG 3 cut(s) 687, 1802, 1857
BmrI ACTGGG 2 cut(s) 2189, 2730
BmsI GCATC 8 cut(s) 74, 727, 752, 1017, 1606, 1656, 1772, 2566
BmuI ACTGGG 2 cut(s) 2189, 2730
BoxI GACNNNNGTC 1 cut(s) 2729
BpiI GAAGAC 4 cut(s) 1149, 1206, 1712, 2723
BpmI CTGGAG 1 cut(s) 899
Bpu10I CCTNAGC 2 cut(s) 1676, 2448
BpuEI CTTGAG 5 cut(s) 474, 2070, 2635, 2734, 3296
BpuMI CCSGG 1 cut(s) 1857
BsaBI GATNNNNATC 1 cut(s) 930
BsaI GGTCTC 3 cut(s) 2299, 2665, 3075
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 455, 1064
Bse1I ACTGG 5 cut(s) 348, 429, 1198, 2195, 2725
Bse21I CCTNAGG 2 cut(s) 285, 309
Bse3DI GCAATG 2 cut(s) 2065, 2481
Bse8I GATNNNNATC 1 cut(s) 930
BseBI CCWGG 2 cut(s) 687, 1802
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 3 cut(s) 173, 455, 1064
BseMI GCAATG 2 cut(s) 2065, 2481
BseNI ACTGG 5 cut(s) 348, 429, 1198, 2195, 2725
BseRI GAGGAG 5 cut(s) 1338, 1661, 1664, 2737, 3177
BseX3I CGGCCG 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 1550
Bsh1236I CGCG 1 cut(s) 2890
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 7 cut(s) 166, 225, 347, 428, 1629, 1985, 2007
BshNI GGYRCC 1 cut(s) 1489
BsiEI CGRYCG 1 cut(s) 167
BsiHKCI CYCGRG 3 cut(s) 814, 2298, 2989
BsiSI CCGG 2 cut(s) 167, 1857
BslFI GGGAC 5 cut(s) 1248, 1407, 1562, 2737, 3182
BslI CCNNNNNNNGG 3 cut(s) 173, 455, 1064
BsmAI GTCTC 6 cut(s) 917, 982, 2299, 2665, 2891, 3075
BsmFI GGGAC 5 cut(s) 1248, 1407, 1562, 2737, 3182
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 7 cut(s) 166, 225, 347, 428, 1629, 1985, 2007
Bso31I GGTCTC 3 cut(s) 2299, 2665, 3075
BsoBI CYCGRG 3 cut(s) 814, 2298, 2989
Bsp1286I GDGCHC 1 cut(s) 2649
Bsp1407I TGTACA 1 cut(s) 2277
BspACI CCGC 6 cut(s) 80, 106, 163, 184, 413, 2004
BspANI GGCC 7 cut(s) 166, 225, 347, 428, 1629, 1985, 2007
BspFNI CGCG 1 cut(s) 2890
BspHI TCATGA 2 cut(s) 379, 1699
BspLI GGNNCC 5 cut(s) 282, 447, 1491, 1587, 3170
BspMAI CTGCAG 3 cut(s) 151, 751, 808
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 5 cut(s) 275, 288, 400, 1451, 2087
BspT107I GGYRCC 1 cut(s) 1489
BspTNI GGTCTC 3 cut(s) 2299, 2665, 3075
BsrDI GCAATG 2 cut(s) 2065, 2481
BsrGI TGTACA 1 cut(s) 2277
BsrI ACTGG 5 cut(s) 348, 429, 1198, 2195, 2725
BssT1I CCWWGG 5 cut(s) 1460, 1908, 2392, 2582, 2915
Bst2UI CCWGG 2 cut(s) 687, 1802
Bst6I CTCTTC 6 cut(s) 291, 980, 2530, 2614, 3004, 3238
BstAUI TGTACA 1 cut(s) 2277
BstC8I GCNNGC 6 cut(s) 110, 710, 784, 979, 1017, 1747
BstFNI CGCG 1 cut(s) 2890
BstH2I RGCGCY 2 cut(s) 2806, 3216
BstHHI GCGC 2 cut(s) 2805, 3215
BstMAI GTCTC 6 cut(s) 917, 982, 2299, 2665, 2891, 3075
BstMCI CGRYCG 1 cut(s) 167
BstNI CCWGG 2 cut(s) 687, 1802
BstNSI RCATGY 4 cut(s) 190, 680, 1019, 2207
BstPAI GACNNNNGTC 1 cut(s) 2729
BstSCI CCNGG 3 cut(s) 685, 1800, 1855
BstSFI CTRYAG 4 cut(s) 147, 747, 804, 2676
BstUI CGCG 1 cut(s) 2890
BstV2I GAAGAC 4 cut(s) 1149, 1206, 1712, 2723
BstX2I RGATCY 5 cut(s) 280, 392, 1076, 1183, 1456
BstYI RGATCY 5 cut(s) 280, 392, 1076, 1183, 1456
BstZI CGGCCG 1 cut(s) 164
Bsu36I CCTNAGG 2 cut(s) 285, 309
BsuI GTATCC 3 cut(s) 942, 2040, 2398
BsuRI GGCC 7 cut(s) 166, 225, 347, 428, 1629, 1985, 2007
BtrI CACGTC 1 cut(s) 1662
BtsIMutI CAGTG 6 cut(s) 1533, 1648, 1935, 1945, 2766, 3246
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 6 cut(s) 110, 710, 784, 979, 1017, 1747
CaiI CAGNNNCTG 2 cut(s) 764, 863
CciI TCATGA 2 cut(s) 379, 1699
CfoI GCGC 2 cut(s) 2805, 3215
Cfr13I GGNCC 8 cut(s) 224, 313, 326, 458, 524, 1628, 2883, 3169
CseI GACGC 1 cut(s) 2636
Csp6I GTAC 7 cut(s) 86, 1191, 1490, 1784, 2278, 2306, 2371
CspCI CAANNNNNGTGG 2 cut(s) 2464, 2499
CviQI GTAC 7 cut(s) 86, 1191, 1490, 1784, 2278, 2306, 2371
DriI GACNNNNNGTC 1 cut(s) 3088
EaeI YGGCCR 3 cut(s) 164, 345, 426
EagI CGGCCG 1 cut(s) 164
Eam1104I CTCTTC 6 cut(s) 291, 980, 2530, 2614, 3004, 3238
Eam1105I GACNNNNNGTC 1 cut(s) 3088
EarI CTCTTC 6 cut(s) 291, 980, 2530, 2614, 3004, 3238
EciI GGCGGA 1 cut(s) 402
EclXI CGGCCG 1 cut(s) 164
Eco130I CCWWGG 5 cut(s) 1460, 1908, 2392, 2582, 2915
Eco24I GRGCYC 1 cut(s) 2649
Eco31I GGTCTC 3 cut(s) 2299, 2665, 3075
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 6 cut(s) 313, 326, 458, 524, 2883, 3169
Eco47III AGCGCT 2 cut(s) 2804, 3214
Eco52I CGGCCG 1 cut(s) 164
Eco81I CCTNAGG 2 cut(s) 285, 309
Eco88I CYCGRG 3 cut(s) 814, 2298, 2989
EcoO109I RGGNCCY 2 cut(s) 313, 2883
EcoRI GAATTC 2 cut(s) 532, 1330
EcoRII CCWGG 2 cut(s) 685, 1800
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 5 cut(s) 1460, 1908, 2392, 2582, 2915
EcoT22I ATGCAT 2 cut(s) 678, 1017
EcoT38I GRGCYC 1 cut(s) 2649
ErhI CCWWGG 5 cut(s) 1460, 1908, 2392, 2582, 2915
FalI AAGNNNNNCTT 6 cut(s) 1992, 2024, 2743, 2775, 3118, 3150
FaqI GGGAC 5 cut(s) 1248, 1407, 1562, 2737, 3182
FbaI TGATCA 2 cut(s) 472, 1162
FblI GTMKAC 1 cut(s) 2836
FriOI GRGCYC 1 cut(s) 2649
FspBI CTAG 9 cut(s) 72, 779, 1092, 1266, 1428, 1449, 2463, 2508, 2550
GlaI GCGC 2 cut(s) 2804, 3214
GsuI CTGGAG 1 cut(s) 899
HaeII RGCGCY 2 cut(s) 2806, 3216
HaeIII GGCC 7 cut(s) 166, 225, 347, 428, 1629, 1985, 2007
HapII CCGG 2 cut(s) 167, 1857
HgaI GACGC 1 cut(s) 2636
HhaI GCGC 2 cut(s) 2805, 3215
Hin6I GCGC 2 cut(s) 2803, 3213
HinP1I GCGC 2 cut(s) 2803, 3213
HincII GTYRAC 1 cut(s) 1303
HindII GTYRAC 1 cut(s) 1303
HindIII AAGCTT 1 cut(s) 3269
HpaI GTTAAC 1 cut(s) 1303
HpaII CCGG 2 cut(s) 167, 1857
HphI GGTGA 5 cut(s) 207, 552, 939, 1289, 1500
Hpy166II GTNNAC 6 cut(s) 461, 1303, 1865, 2837, 3262, 3303
Hpy8I GTNNAC 6 cut(s) 461, 1303, 1865, 2837, 3262, 3303
Hpy99I CGWCG 2 cut(s) 960, 1666
HpyCH4IV ACGT 7 cut(s) 84, 335, 955, 1146, 1516, 1661, 2411
HpySE526I ACGT 7 cut(s) 84, 335, 955, 1146, 1516, 1661, 2411
HspAI GCGC 2 cut(s) 2803, 3213
KpnI GGTACC 1 cut(s) 1493
Ksp22I TGATCA 2 cut(s) 472, 1162
KspAI GTTAAC 1 cut(s) 1303
LmnI GCTCC 4 cut(s) 367, 1351, 1464, 3154
LweI GCATC 8 cut(s) 74, 727, 752, 1017, 1606, 1656, 1772, 2566
MaeI CTAG 9 cut(s) 72, 779, 1092, 1266, 1428, 1449, 2463, 2508, 2550
MaeII ACGT 7 cut(s) 84, 335, 955, 1146, 1516, 1661, 2411
MaeIII GTNAC 8 cut(s) 945, 959, 1244, 1606, 2197, 2206, 2241, 3128
MfeI CAATTG 4 cut(s) 27, 252, 483, 1320
MflI RGATCY 5 cut(s) 280, 392, 1076, 1183, 1456
MhlI GDGCHC 1 cut(s) 2649
MlsI TGGCCA 2 cut(s) 347, 428
MluNI TGGCCA 2 cut(s) 347, 428
MlyI GAGTC 1 cut(s) 3272
MmeI TCCRAC 2 cut(s) 1635, 2120
Mox20I TGGCCA 2 cut(s) 347, 428
Mph1103I ATGCAT 2 cut(s) 678, 1017
MroXI GAANNNNTTC 3 cut(s) 1330, 2457, 2470
MscI TGGCCA 2 cut(s) 347, 428
MseI TTAA 5 cut(s) 191, 732, 1170, 1302, 2427
MslI CAYNNNNRTG 2 cut(s) 1020, 1664
Msp20I TGGCCA 2 cut(s) 347, 428
MspA1I CMGCKG 3 cut(s) 152, 761, 803
MspI CCGG 2 cut(s) 167, 1857
MspR9I CCNGG 3 cut(s) 687, 1802, 1857
MunI CAATTG 4 cut(s) 27, 252, 483, 1320
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 2 cut(s) 687, 1802
MvnI CGCG 1 cut(s) 2890
NciI CCSGG 1 cut(s) 1857
NlaIV GGNNCC 5 cut(s) 282, 447, 1491, 1587, 3170
NmuCI GTSAC 6 cut(s) 945, 959, 2197, 2206, 2241, 3128
NsiI ATGCAT 2 cut(s) 678, 1017
NspI RCATGY 4 cut(s) 190, 680, 1019, 2207
PaeI GCATGC 1 cut(s) 1019
PaeR7I CTCGAG 2 cut(s) 814, 2298
PagI TCATGA 2 cut(s) 379, 1699
PasI CCCWGGG 1 cut(s) 1801
PciI ACATGT 1 cut(s) 2203
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 3 cut(s) 1330, 2457, 2470
PleI GAGTC 1 cut(s) 3272
PpsI GAGTC 1 cut(s) 3272
PpuMI RGGWCCY 2 cut(s) 313, 2883
PscI ACATGT 1 cut(s) 2203
PshAI GACNNNNGTC 1 cut(s) 2729
PshBI ATTAAT 1 cut(s) 1170
Psp5II RGGWCCY 2 cut(s) 313, 2883
Psp6I CCWGG 2 cut(s) 685, 1800
PspGI CCWGG 2 cut(s) 685, 1800
PspN4I GGNNCC 5 cut(s) 282, 447, 1491, 1587, 3170
PspPI GGNCC 8 cut(s) 224, 313, 326, 458, 524, 1628, 2883, 3169
PspPPI RGGWCCY 2 cut(s) 313, 2883
PsrI GAACNNNNNNTAC 2 cut(s) 2953, 2985
PstI CTGCAG 3 cut(s) 151, 751, 808
PstNI CAGNNNCTG 2 cut(s) 764, 863
PsuI RGATCY 5 cut(s) 280, 392, 1076, 1183, 1456
PvuII CAGCTG 3 cut(s) 152, 761, 803
RsaI GTAC 7 cut(s) 87, 1192, 1491, 1785, 2279, 2307, 2372
RsaNI GTAC 7 cut(s) 86, 1191, 1490, 1784, 2278, 2306, 2371
RseI CAYNNNNRTG 2 cut(s) 1020, 1664
SaqAI TTAA 5 cut(s) 191, 732, 1170, 1302, 2427
Sau96I GGNCC 8 cut(s) 224, 313, 326, 458, 524, 1628, 2883, 3169
SchI GAGTC 1 cut(s) 3272
ScrFI CCNGG 3 cut(s) 687, 1802, 1857
SduI GDGCHC 1 cut(s) 2649
SfaNI GCATC 8 cut(s) 74, 727, 752, 1017, 1606, 1656, 1772, 2566
SfcI CTRYAG 4 cut(s) 147, 747, 804, 2676
Sfr274I CTCGAG 2 cut(s) 814, 2298
SinI GGWCC 6 cut(s) 313, 326, 458, 524, 2883, 3169
SlaI CTCGAG 2 cut(s) 814, 2298
SmiMI CAYNNNNRTG 2 cut(s) 1020, 1664
SmlI CTYRAG 7 cut(s) 489, 814, 2085, 2298, 2650, 2749, 3311
SmoI CTYRAG 7 cut(s) 489, 814, 2085, 2298, 2650, 2749, 3311
SphI GCATGC 1 cut(s) 1019
SsiI CCGC 6 cut(s) 80, 106, 163, 184, 413, 2004
SspI AATATT 2 cut(s) 824, 1054
SspMI CTAG 9 cut(s) 72, 779, 1092, 1266, 1428, 1449, 2463, 2508, 2550
StyD4I CCNGG 3 cut(s) 685, 1800, 1855
StyI CCWWGG 5 cut(s) 1460, 1908, 2392, 2582, 2915
TaiI ACGT 7 cut(s) 87, 338, 958, 1149, 1519, 1664, 2414
TaqI TCGA 5 cut(s) 664, 815, 1664, 2299, 3322
TaqII GACCGA 1 cut(s) 2281
TatI WGTACW 2 cut(s) 2277, 2305
TauI GCSGC 3 cut(s) 166, 186, 2007
Tru1I TTAA 5 cut(s) 191, 732, 1170, 1302, 2427
Tru9I TTAA 5 cut(s) 191, 732, 1170, 1302, 2427
TscAI CASTG 6 cut(s) 1533, 1648, 1935, 1945, 2773, 3246
TseFI GTSAC 6 cut(s) 945, 959, 2197, 2206, 2241, 3128
Tsp45I GTSAC 6 cut(s) 945, 959, 2197, 2206, 2241, 3128
TspGWI ACGGA 2 cut(s) 144, 1492
TspRI CASTG 6 cut(s) 1533, 1648, 1935, 1945, 2773, 3246
VpaK11BI GGWCC 6 cut(s) 313, 326, 458, 524, 2883, 3169
VspI ATTAAT 1 cut(s) 1170
XbaI TCTAGA 1 cut(s) 2507
XceI RCATGY 4 cut(s) 190, 680, 1019, 2207
XhoI CTCGAG 2 cut(s) 814, 2298
XmiI GTMKAC 1 cut(s) 2836
XmnI GAANNNNTTC 3 cut(s) 1330, 2457, 2470
XspI CTAG 9 cut(s) 72, 779, 1092, 1266, 1428, 1449, 2463, 2508, 2550
Zsp2I ATGCAT 2 cut(s) 678, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.