RchiOBHm_Chr2g0136031

synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
53258895 .. 53259396
502 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50686

Sequence Viewer

Length: 225 bp
ATGCTCAGCGAACATGGCGTTCATCAACCGCTGATAAGTTGCACCGGCGTTCTTCAGACCAAAAGGCATGACATTGTAGCAGTAGAGGCCTTTGTCGGTGGTGAAGGTGGTGCATTCTTGGTCGCTGGGGTGCATTTTGATCTGGTTGTATCCGGAGAAGGCATCCATCATGCTGAGGAGTTCGTGCCCGGCGGTTGCATCGACCAGCTGATCGATACGAGGTAG

Protein Analysis

74

Amino Acids

7.8

Weight (kDa)

5.04

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 2 cut(s) 29, 192
AcuI CTGAAG 1 cut(s) 38
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 174
BciVI GTATCC 1 cut(s) 160
BcnI CCSGG 1 cut(s) 189
BfuI GTATCC 1 cut(s) 160
BlpI GCTNAGC 1 cut(s) 5
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 171, 207
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 213
BseGI GGATG 1 cut(s) 162
BseMII CTCAG 2 cut(s) 19, 165
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 213
BsiSI CCGG 3 cut(s) 45, 153, 189
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 2 cut(s) 139, 210
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 2 cut(s) 29, 192
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 18, 166
BspDI ATCGAT 1 cut(s) 213
BspEI TCCGGA 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 2 cut(s) 139, 210
BstDEI CTNAG 2 cut(s) 5, 174
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 2 cut(s) 142, 213
BstMBI GATC 2 cut(s) 139, 210
BstMWI GCNNNNNNNGC 2 cut(s) 15, 86
BstSCI CCNGG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 213
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 213
CviAII CATG 3 cut(s) 14, 68, 170
CviJI RGCY 2 cut(s) 89, 208
CviKI_1 RGCY 2 cut(s) 89, 208
DdeI CTNAG 2 cut(s) 5, 174
DpnI GATC 2 cut(s) 141, 212
DpnII GATC 2 cut(s) 139, 210
Eco147I AGGCCT 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 38
FaeI CATG 3 cut(s) 17, 71, 173
FaiI YATR 3 cut(s) 15, 69, 171
FatI CATG 3 cut(s) 13, 67, 169
FokI GGATG 1 cut(s) 149
GsaI CCCAGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 89
HapII CCGG 3 cut(s) 45, 153, 189
Hin1II CATG 3 cut(s) 17, 71, 173
HpaII CCGG 3 cut(s) 45, 153, 189
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 153
HpyAV CCTTC 2 cut(s) 98, 152
HpyCH4V TGCA 4 cut(s) 42, 113, 133, 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 86
HpyF3I CTNAG 2 cut(s) 5, 174
Hsp92II CATG 3 cut(s) 17, 71, 173
Kpn2I TCCGGA 1 cut(s) 152
Kzo9I GATC 2 cut(s) 139, 210
LpnPI CCDG 6 cut(s) 58, 111, 128, 166, 202, 218
LweI GCATC 2 cut(s) 171, 207
MalI GATC 2 cut(s) 141, 212
MboI GATC 2 cut(s) 139, 210
MboII GAAGA 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 189
MnlI CCTC 3 cut(s) 79, 169, 213
MroI TCCGGA 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 31, 208
MspI CCGG 3 cut(s) 45, 153, 189
MspR9I CCNGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 15, 86
NciI CCSGG 1 cut(s) 189
NdeII GATC 2 cut(s) 139, 210
NlaIII CATG 3 cut(s) 17, 71, 173
PceI AGGCCT 1 cut(s) 89
PctI GAATGC 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 208
Sau3AI GATC 2 cut(s) 139, 210
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 189
SetI ASST 3 cut(s) 109, 210, 224
SfaNI GCATC 2 cut(s) 171, 207
SgrAI CRCCGGYG 1 cut(s) 44
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 29, 192
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 187
TaqI TCGA 2 cut(s) 201, 213
TspDTI ATGAA 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.