Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Forward (+)

48863444 .. 48863902

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG336900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATTTCTCACTAAAGAAATCCTTCAAATCTCTTAGCTCCAGTAAACACATCTCTGCTGAAGCAGACCACAGCAGCCACGAGAAGCTCCCCATTCTACTGGATCACCACAACGAACAACATGCAATGAGTGCCGTTGATTCCTCCAACCGCCGCGAGGTCTTCGCCAAGATCGACGAGGGCGGCGCTTCCTCCACCACTACAGAAGCTGACCCCACGAAACTCGGCGCCTGGATTTGGCAGGAGTCCAGTATCGATTTCTGGAAGGACGACAGGAGCAATGTCTGCTCCGGCGGGGAATTTGAGTTTGGTCAAAAGAAGAAGACGGCGGCGAAGACTGAGGAGGAGGAGGAGGAGGATCCGTCGTCGAAGCTGATAGGGAGGTTCCTGCACAAGCAGAGAGCGTCCAGCGATTCGTCGTTGGACATGGATTTGGAGATGGACGAGCTACGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

152

Amino Acids

17.07

Weight (kDa)

5.05

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	1 cut(s)	156
AciI	CCGC	5 cut(s)	151, 154, 183, 294, 329
AclWI	GGATC	3 cut(s)	111, 353, 366
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	157, 237
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	5 cut(s)	39, 88, 209, 373, 448
AluI	AGCT	5 cut(s)	39, 88, 209, 373, 448
AlwI	GGATC	3 cut(s)	111, 353, 366
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	188, 230
AsuHPI	GGTGA	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	3 cut(s)	154, 329, 341
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	2 cut(s)	119, 342
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	232
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	2 cut(s)	189, 231
BisI	GCNGC	4 cut(s)	76, 154, 184, 330
BlsI	GCNGC	4 cut(s)	77, 155, 185, 331
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	229, 360, 386
BmrFI	CCNGG	1 cut(s)	232
BpiI	GAAGAC	3 cut(s)	154, 329, 341
BpmI	CTGGAG	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 237
Bse1I	ACTGG	3 cut(s)	42, 105, 249
Bse3DI	GCAATG	2 cut(s)	132, 286
BseBI	CCWGG	1 cut(s)	232
BseCI	ATCGAT	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	157, 237
BseMI	GCAATG	2 cut(s)	132, 286
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	42, 105, 249
BseRI	GAGGAG	5 cut(s)	356, 359, 362, 365, 368
BseXI	GCAGC	1 cut(s)	87
BsgI	GTGCAG	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	157, 237
BsnI	GGCC	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	103, 171, 358
BspACI	CCGC	5 cut(s)	151, 154, 183, 294, 329
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	229, 360, 386
BspPI	GGATC	3 cut(s)	111, 353, 366
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	132, 286
BsrI	ACTGG	3 cut(s)	42, 105, 249
BssMI	GATC	3 cut(s)	103, 171, 358
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	232
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	2 cut(s)	131, 285
BstDEI	CTNAG	2 cut(s)	35, 339
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	2 cut(s)	189, 231
BstHHI	GCGC	2 cut(s)	188, 230
BstKTI	GATC	3 cut(s)	106, 174, 361
BstMBI	GATC	3 cut(s)	103, 171, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 285
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	3 cut(s)	154, 329, 341
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	454
BsuTUI	ATCGAT	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	209
CfoI	GCGC	2 cut(s)	188, 230
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	393
CviAII	CATG	2 cut(s)	122, 427
CviJI	RGCY	7 cut(s)	39, 78, 88, 209, 373, 448, 454
CviKI_1	RGCY	7 cut(s)	39, 78, 88, 209, 373, 448, 454
DdeI	CTNAG	2 cut(s)	35, 339
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	3 cut(s)	105, 173, 360
DpnII	GATC	3 cut(s)	103, 171, 358
EaeI	YGGCCR	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	230
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
FaeI	CATG	2 cut(s)	125, 430
FaiI	YATR	3 cut(s)	123, 428, 457
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	2 cut(s)	121, 426
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	4 cut(s)	76, 154, 184, 330
Fsp4HI	GCNGC	4 cut(s)	76, 154, 184, 330
GlaI	GCGC	2 cut(s)	187, 229
GluI	GCNGC	4 cut(s)	76, 154, 184, 330
GsuI	CTGGAG	1 cut(s)	25
HaeII	RGCGCY	2 cut(s)	189, 231
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	393
HhaI	GCGC	2 cut(s)	188, 230
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	125, 430
Hin6I	GCGC	2 cut(s)	186, 228
HinP1I	GCGC	2 cut(s)	186, 228
HinfI	GANTC	3 cut(s)	140, 245, 413
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	4 cut(s)	179, 367, 370, 421
HpyAV	CCTTC	2 cut(s)	34, 259
HpyCH4V	TGCA	2 cut(s)	125, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 285
HpyF3I	CTNAG	2 cut(s)	35, 339
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	125, 430
HspAI	GCGC	2 cut(s)	186, 228
KasI	GGCGCC	1 cut(s)	227
Kzo9I	GATC	3 cut(s)	103, 171, 358
LmnI	GCTCC	4 cut(s)	44, 93, 276, 293
Lsp1109I	GCAGC	1 cut(s)	87
MalI	GATC	3 cut(s)	105, 173, 360
MboI	GATC	3 cut(s)	103, 171, 358
MboII	GAAGA	4 cut(s)	154, 331, 334, 346
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	1 cut(s)	299
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	2 cut(s)	171, 402
MroXI	GAANNNNTTC	1 cut(s)	23
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	131, 285
NarI	GGCGCC	1 cut(s)	228
NdeII	GATC	3 cut(s)	103, 171, 358
NlaIII	CATG	2 cut(s)	125, 430
NlaIV	GGNNCC	3 cut(s)	229, 360, 386
NmeAIII	GCCGAG	1 cut(s)	204
NspI	RCATGY	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	140, 413
PkrI	GCNGC	4 cut(s)	77, 155, 185, 331
PleI	GAGTC	1 cut(s)	253
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	229, 360, 386
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	358
SatI	GCNGC	4 cut(s)	76, 154, 184, 330
Sau3AI	GATC	3 cut(s)	103, 171, 358
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	7 cut(s)	41, 90, 162, 211, 375, 386, 450
SfcI	CTRYAG	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	229
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	5 cut(s)	151, 154, 183, 294, 329
SspDI	GGCGCC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	230
TaqI	TCGA	3 cut(s)	174, 255, 368
TasI	AATT	1 cut(s)	299
TauI	GCSGC	3 cut(s)	156, 186, 332
TfiI	GAWTC	2 cut(s)	140, 413
TseI	GCWGC	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	351
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.