Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Forward (+)

35793992 .. 35794844

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGATTTCTCACTCAAGAAATCCTTCAAATCTCTTGGCTCCAGTAAACACATCTCTGGCGAAGCAGACCATAGTAGCCACGAGAAGCTCCCCATTCTACTAGATCACCACAACGAACAGCACGCAATGAGCGCCGTCGATTCGTCCGACTCCCGGGAGGTCTTCATCAAGATCGACGAGGGCGGCGCTTCCTCCACCACTACAGAAGCCTACCCCACGAAACTCGGCGCTGAAATTTGGCGGGAGTCCAGTATCGATTTCTGGAAGGACGACGGGAGCAATGTCTGCTCCAGCGGGGAATTTGAGTTTGGTTTGAAGAAGAAGACAGCGGCGAAAACTAAGGAGCAGGAGGAGGAGGATCTGCCGTCAAAGCTGATAGGGAGGTTCCTGCACAAGCAGAGAGCGTCCGGCGACTTGTCGTTGGACATGGATTTGGAGATGGAAGAGCTACGACCGCAGGATTTGCCGCCACTGGCGGAGTCTCCGAGGAACTCAAGCACGTCTAGGGAGATCAAGGTGTCGTCGGTGAGGAGACAGCGGTGGTCTGGTGAGGAGACGGCGGATCTTTCATTTGTTGGACAATCAAGTATAGATAACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

201

Amino Acids

22.29

Weight (kDa)

5.07

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	183, 241, 294, 329, 455, 467, 476, 538, 560
AclWI	GGATC	2 cut(s)	366, 570
AcsI	RAATTY	2 cut(s)	234, 299
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	28, 316
AjiI	CACGTC	1 cut(s)	501
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	3 cut(s)	88, 373, 448
AluI	AGCT	3 cut(s)	88, 373, 448
Alw26I	GTCTC	3 cut(s)	486, 526, 548
AlwI	GGATC	2 cut(s)	366, 570
Ama87I	CYCGRG	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	234, 299
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	3 cut(s)	134, 188, 230
AsuC2I	CCSGG	2 cut(s)	154, 155
AsuHPI	GGTGA	3 cut(s)	98, 538, 560
AvaI	CYCGRG	1 cut(s)	153
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	2 cut(s)	154, 329
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	3 cut(s)	119, 349, 573
BcnI	CCSGG	2 cut(s)	154, 155
BcoDI	GTCTC	3 cut(s)	486, 526, 548
BfaI	CTAG	3 cut(s)	101, 504, 601
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	3 cut(s)	135, 189, 231
BisI	GCNGC	3 cut(s)	184, 330, 467
BlsI	GCNGC	3 cut(s)	185, 331, 468
Bme1390I	CCNGG	2 cut(s)	154, 155
BmeT110I	CYCGRG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	501
BmiI	GGNNCC	2 cut(s)	40, 386
BmrFI	CCNGG	2 cut(s)	154, 155
BpiI	GAAGAC	2 cut(s)	154, 329
BpmI	CTGGAG	2 cut(s)	25, 274
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	2 cut(s)	154, 155
Bsa29I	ATCGAT	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	153, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	3 cut(s)	42, 249, 477
Bse3DI	GCAATG	2 cut(s)	132, 286
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	153, 485
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	2 cut(s)	132, 286
BseNI	ACTGG	3 cut(s)	42, 249, 477
BseRI	GAGGAG	4 cut(s)	365, 368, 544, 566
BsgI	GTGCAG	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	455
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	455
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	154, 408
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	3 cut(s)	486, 526, 548
BsmBI	CGTCTC	1 cut(s)	548
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	103, 171, 358, 510, 562
BspACI	CCGC	9 cut(s)	183, 241, 294, 329, 455, 467, 476, 538, 560
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	40, 386
BspPI	GGATC	2 cut(s)	366, 570
BspQI	GCTCTTC	1 cut(s)	438
BsrDI	GCAATG	2 cut(s)	132, 286
BsrI	ACTGG	3 cut(s)	42, 249, 477
BssECI	CCNNGG	2 cut(s)	153, 485
BssMI	GATC	5 cut(s)	103, 171, 358, 510, 562
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	2 cut(s)	285, 463
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	339
BstH2I	RGCGCY	3 cut(s)	135, 189, 231
BstHHI	GCGC	3 cut(s)	134, 188, 230
BstKTI	GATC	5 cut(s)	106, 174, 361, 513, 565
BstMAI	GTCTC	3 cut(s)	486, 526, 548
BstMBI	GATC	5 cut(s)	103, 171, 358, 510, 562
BstMCI	CGRYCG	1 cut(s)	455
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 285, 370, 454, 463
BstSCI	CCNGG	2 cut(s)	152, 153
BstSFI	CTRYAG	1 cut(s)	201
BstV2I	GAAGAC	2 cut(s)	154, 329
BstX2I	RGATCY	2 cut(s)	358, 562
BstYI	RGATCY	2 cut(s)	358, 562
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	3 cut(s)	134, 188, 230
Cfr9I	CCCGGG	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	393
CviAII	CATG	1 cut(s)	427
CviJI	RGCY	6 cut(s)	39, 78, 88, 209, 373, 448
CviKI_1	RGCY	6 cut(s)	39, 78, 88, 209, 373, 448
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	5 cut(s)	105, 173, 360, 512, 564
DpnII	GATC	5 cut(s)	103, 171, 358, 510, 562
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	2 cut(s)	491, 575
Eco88I	CYCGRG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	1 cut(s)	430
FaiI	YATR	3 cut(s)	72, 428, 590
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	1 cut(s)	426
FauI	CCCGC	2 cut(s)	234, 287
Fnu4HI	GCNGC	3 cut(s)	184, 330, 467
Fsp4HI	GCNGC	3 cut(s)	184, 330, 467
FspBI	CTAG	3 cut(s)	101, 504, 601
GlaI	GCGC	3 cut(s)	133, 187, 229
GluI	GCNGC	3 cut(s)	184, 330, 467
GsuI	CTGGAG	2 cut(s)	25, 274
HaeII	RGCGCY	3 cut(s)	135, 189, 231
HapII	CCGG	2 cut(s)	154, 408
HgaI	GACGC	1 cut(s)	393
HhaI	GCGC	3 cut(s)	134, 188, 230
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	3 cut(s)	132, 186, 228
HinP1I	GCGC	3 cut(s)	132, 186, 228
HinfI	GANTC	4 cut(s)	140, 149, 245, 479
HpaII	CCGG	2 cut(s)	154, 408
HphI	GGTGA	3 cut(s)	98, 538, 560
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	148, 486
Hpy188III	TCNNGA	3 cut(s)	16, 169, 262
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	4 cut(s)	140, 179, 275, 526
HpyAV	CCTTC	2 cut(s)	34, 259
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 285, 370, 454, 463
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	3 cut(s)	132, 186, 228
Kzo9I	GATC	5 cut(s)	103, 171, 358, 510, 562
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	5 cut(s)	44, 93, 276, 293, 343
MaeI	CTAG	3 cut(s)	101, 504, 601
MaeII	ACGT	1 cut(s)	500
MalI	GATC	5 cut(s)	105, 173, 360, 512, 564
MboI	GATC	5 cut(s)	103, 171, 358, 510, 562
MboII	GAAGA	5 cut(s)	154, 328, 331, 334, 455
MflI	RGATCY	2 cut(s)	358, 562
MluCI	AATT	2 cut(s)	234, 299
MlyI	GAGTC	3 cut(s)	143, 254, 488
MmeI	TCCRAC	3 cut(s)	171, 402, 556
MroXI	GAANNNNTTC	1 cut(s)	23
MspA1I	CMGCKG	3 cut(s)	294, 329, 538
MspI	CCGG	2 cut(s)	154, 408
MspR9I	CCNGG	2 cut(s)	154, 155
MwoI	GCNNNNNNNGC	5 cut(s)	131, 285, 370, 454, 463
NciI	CCSGG	2 cut(s)	154, 155
NdeII	GATC	5 cut(s)	103, 171, 358, 510, 562
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	2 cut(s)	40, 386
NmeAIII	GCCGAG	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	185, 331, 468
PleI	GAGTC	3 cut(s)	143, 253, 487
PpsI	GAGTC	3 cut(s)	143, 253, 487
PspN4I	GGNNCC	2 cut(s)	40, 386
PsuI	RGATCY	2 cut(s)	358, 562
SapI	GCTCTTC	1 cut(s)	438
SatI	GCNGC	3 cut(s)	184, 330, 467
Sau3AI	GATC	5 cut(s)	103, 171, 358, 510, 562
SchI	GAGTC	3 cut(s)	143, 254, 488
ScrFI	CCNGG	2 cut(s)	154, 155
SetI	ASST	7 cut(s)	90, 162, 375, 386, 450, 503, 519
SfcI	CTRYAG	1 cut(s)	201
SmaI	CCCGGG	1 cut(s)	155
SmlI	CTYRAG	2 cut(s)	14, 493
SmoI	CTYRAG	2 cut(s)	14, 493
Sse9I	AATT	2 cut(s)	234, 299
SsiI	CCGC	9 cut(s)	183, 241, 294, 329, 455, 467, 476, 538, 560
SspMI	CTAG	3 cut(s)	101, 504, 601
StyD4I	CCNGG	2 cut(s)	152, 153
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	3 cut(s)	138, 174, 255
TasI	AATT	2 cut(s)	234, 299
TauI	GCSGC	3 cut(s)	186, 332, 469
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	154, 558
TspMI	CCCGGG	1 cut(s)	153
TspRI	CASTG	1 cut(s)	477
XapI	RAATTY	2 cut(s)	234, 299
XmaI	CCCGGG	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	3 cut(s)	101, 504, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.