Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005947.1

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Forward (+)

156300 .. 160849

Gene Structure 4550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005947.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgctcagcgaacatggcgttcatcaaccgctgataagttacaccggcgttcttcagaccaaatggcatgacattgtagcagtagaggcccttatcggtggtgaaggtggtgcattcctggtcgctgggttctcagtttcagaagcttctgatgccatcttggcgcggcgcgtggcggcgcgtcagtggcgatctggaggtggtccgatgctgagtgagtattttattagccggagttgctatagctgtcagcttgggatggttttctcactcaagaaatccttcaaatctcttagctccagtaaacacatctctgccgaagcagaccacagcagccacgagaagctccccattctactagatcaccacaacaaacaacatgcaatgagtgccgttgattcctccgatcgccacgaggtcttcatcaagatcgacgagggcggcgcttcctccaccactacagaagccgaccccacgaaactcatcccctggatttggcgggagtcccgtatcgatttctggaaggacgacgggagcaatgtctgctccggcagggaatttgagtttggtcggaagaagaagactgaggaggagaaggaggaggatctgccgtcgaagctgatagggaggttcctgcacaagcagagaacgtccggcgactcgtcgttggacatagatttggagatggacgagctatggccccaggatttgccgccgctggcgaagtctccgaggaactcatgcatgcttaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

251

Amino Acids

28.04

Weight (kDa)

6.0

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	166, 171, 181
AciI	CCGC	7 cut(s)	29, 166, 176, 441, 499, 713, 716
AclWI	GGATC	1 cut(s)	612
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	3 cut(s)	117, 488, 702
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	7 cut(s)	146, 246, 253, 297, 346, 619, 694
AluI	AGCT	7 cut(s)	146, 246, 253, 297, 346, 619, 694
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	1 cut(s)	612
AoxI	GGCC	2 cut(s)	87, 698
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	4 cut(s)	166, 171, 181, 446
AspS9I	GGNCC	3 cut(s)	88, 203, 699
AsuHPI	GGTGA	2 cut(s)	113, 356
AvaII	GGWCC	1 cut(s)	203
BauI	CACGAG	2 cut(s)	338, 413
BbsI	GAAGAC	2 cut(s)	412, 587
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	3 cut(s)	164, 253, 679
BceAI	ACGGC	2 cut(s)	377, 595
BciT130I	CCWGG	3 cut(s)	119, 490, 704
BcoDI	GTCTC	1 cut(s)	732
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	2 cut(s)	241, 459
BfoI	RGCGCY	1 cut(s)	447
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	6 cut(s)	167, 177, 334, 442, 713, 716
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	6 cut(s)	168, 178, 335, 443, 714, 717
Bme1390I	CCNGG	3 cut(s)	119, 490, 704
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	88, 203, 699
BmiI	GGNNCC	2 cut(s)	632, 701
BmrFI	CCNGG	3 cut(s)	119, 490, 704
BmsI	GCATC	2 cut(s)	142, 198
BpiI	GAAGAC	2 cut(s)	412, 587
BpmI	CTGGAG	2 cut(s)	216, 283
Bpu10I	CCTNAGC	1 cut(s)	749
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	513
BsaJI	CCNNGG	3 cut(s)	488, 702, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	2 cut(s)	390, 544
BseBI	CCWGG	3 cut(s)	119, 490, 704
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	488, 702, 731
BseGI	GGATG	2 cut(s)	264, 483
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMI	GCAATG	2 cut(s)	390, 544
BseMII	CTCAG	4 cut(s)	19, 147, 203, 576
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	3 cut(s)	602, 605, 614
BseXI	GCAGC	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	620
Bsh1236I	CGCG	3 cut(s)	166, 171, 181
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	2 cut(s)	89, 700
BshVI	ATCGAT	1 cut(s)	513
BsiEI	CGRYCG	1 cut(s)	409
BsiSI	CCGG	4 cut(s)	45, 232, 549, 654
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	732
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	89, 700
Bsp143I	GATC	5 cut(s)	191, 361, 406, 429, 604
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	7 cut(s)	29, 166, 176, 441, 499, 713, 716
BspANI	GGCC	2 cut(s)	89, 700
BspCNI	CTCAG	4 cut(s)	18, 146, 204, 577
BspDI	ATCGAT	1 cut(s)	513
BspFNI	CGCG	3 cut(s)	166, 171, 181
BspLI	GGNNCC	2 cut(s)	632, 701
BspPI	GGATC	1 cut(s)	612
BsrDI	GCAATG	2 cut(s)	390, 544
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	488, 702, 731
BssMI	GATC	5 cut(s)	191, 361, 406, 429, 604
BssSI	CACGAG	2 cut(s)	338, 413
Bst2BI	CACGAG	2 cut(s)	338, 413
Bst2UI	CCWGG	3 cut(s)	119, 490, 704
BstAPI	GCANNNNNTGC	2 cut(s)	389, 543
BstC8I	GCNNGC	2 cut(s)	720, 746
BstDEI	CTNAG	6 cut(s)	5, 133, 212, 293, 585, 749
BstF5I	GGATG	2 cut(s)	264, 483
BstFNI	CGCG	3 cut(s)	166, 171, 181
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	4 cut(s)	166, 171, 181, 446
BstKTI	GATC	5 cut(s)	194, 364, 409, 432, 607
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	5 cut(s)	191, 361, 406, 429, 604
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	9 cut(s)	15, 86, 152, 161, 187, 237, 389, 543, 616
BstNI	CCWGG	3 cut(s)	119, 490, 704
BstNSI	RCATGY	2 cut(s)	383, 748
BstSCI	CCNGG	3 cut(s)	117, 488, 702
BstSFI	CTRYAG	2 cut(s)	241, 459
BstUI	CGCG	3 cut(s)	166, 171, 181
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	2 cut(s)	412, 587
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
Bsu15I	ATCGAT	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	89, 700
BsuTUI	ATCGAT	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	264, 483
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	720, 746
CfoI	GCGC	4 cut(s)	166, 171, 181, 446
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	88, 203, 699
ClaI	ATCGAT	1 cut(s)	513
CseI	GACGC	1 cut(s)	170
CviAII	CATG	5 cut(s)	14, 68, 380, 741, 745
DdeI	CTNAG	6 cut(s)	5, 133, 212, 293, 585, 749
DpnI	GATC	5 cut(s)	193, 363, 408, 431, 606
DpnII	GATC	5 cut(s)	191, 361, 406, 429, 604
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	3 cut(s)	117, 488, 702
EcoT22I	ATGCAT	1 cut(s)	746
FaeI	CATG	5 cut(s)	17, 71, 383, 744, 748
FaiI	YATR	8 cut(s)	15, 69, 243, 381, 674, 697, 742, 746
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	5 cut(s)	13, 67, 379, 740, 744
FauI	CCCGC	1 cut(s)	492
Fnu4HI	GCNGC	6 cut(s)	167, 177, 334, 442, 713, 716
FokI	GGATG	2 cut(s)	271, 470
Fsp4HI	GCNGC	6 cut(s)	167, 177, 334, 442, 713, 716
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	4 cut(s)	165, 170, 180, 445
GluI	GCNGC	6 cut(s)	167, 177, 334, 442, 713, 716
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	2 cut(s)	216, 283
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	89, 700
HapII	CCGG	4 cut(s)	45, 232, 549, 654
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	4 cut(s)	166, 171, 181, 446
Hin1II	CATG	5 cut(s)	17, 71, 383, 744, 748
Hin6I	GCGC	4 cut(s)	164, 169, 179, 444
HinP1I	GCGC	4 cut(s)	164, 169, 179, 444
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	3 cut(s)	398, 503, 659
HpaII	CCGG	4 cut(s)	45, 232, 549, 654
HphI	GGTGA	2 cut(s)	113, 356
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	7 cut(s)	57, 142, 151, 207, 406, 573, 732
Hpy188III	TCNNGA	4 cut(s)	195, 274, 427, 520
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	4 cut(s)	437, 533, 616, 667
HpyAV	CCTTC	4 cut(s)	98, 292, 517, 589
HpyCH4IV	ACGT	1 cut(s)	650
HpyCH4V	TGCA	4 cut(s)	113, 383, 637, 744
HpyF10VI	GCNNNNNNNGC	9 cut(s)	15, 86, 152, 161, 187, 237, 389, 543, 616
HpyF3I	CTNAG	6 cut(s)	5, 133, 212, 293, 585, 749
HpySE526I	ACGT	1 cut(s)	650
Hsp92II	CATG	5 cut(s)	17, 71, 383, 744, 748
HspAI	GCGC	4 cut(s)	164, 169, 179, 444
Kzo9I	GATC	5 cut(s)	191, 361, 406, 429, 604
LmnI	GCTCC	4 cut(s)	302, 351, 534, 551
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	142, 198
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	650
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	5 cut(s)	193, 363, 408, 431, 606
MboI	GATC	5 cut(s)	191, 361, 406, 429, 604
MboII	GAAGA	5 cut(s)	44, 412, 586, 589, 592
MflI	RGATCY	1 cut(s)	604
MluCI	AATT	1 cut(s)	557
MlyI	GAGTC	2 cut(s)	512, 653
MmeI	TCCRAC	2 cut(s)	551, 648
Mph1103I	ATGCAT	1 cut(s)	746
MroXI	GAANNNNTTC	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	31, 718
MspI	CCGG	4 cut(s)	45, 232, 549, 654
MspR9I	CCNGG	3 cut(s)	119, 490, 704
MteI	GCGCNGCGC	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	3 cut(s)	119, 490, 704
MvnI	CGCG	3 cut(s)	166, 171, 181
MwoI	GCNNNNNNNGC	9 cut(s)	15, 86, 152, 161, 187, 237, 389, 543, 616
NdeII	GATC	5 cut(s)	191, 361, 406, 429, 604
NlaIII	CATG	5 cut(s)	17, 71, 383, 744, 748
NlaIV	GGNNCC	2 cut(s)	632, 701
NsiI	ATGCAT	1 cut(s)	746
NspI	RCATGY	2 cut(s)	383, 748
PaeI	GCATGC	1 cut(s)	748
PctI	GAATGC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	6 cut(s)	168, 178, 335, 443, 714, 717
Ple19I	CGATCG	1 cut(s)	409
PleI	GAGTC	2 cut(s)	511, 653
PpsI	GAGTC	2 cut(s)	511, 653
Psp6I	CCWGG	3 cut(s)	117, 488, 702
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	3 cut(s)	117, 488, 702
PspN4I	GGNNCC	2 cut(s)	632, 701
PspPI	GGNCC	3 cut(s)	88, 203, 699
PsuI	RGATCY	1 cut(s)	604
PvuI	CGATCG	1 cut(s)	409
SatI	GCNGC	6 cut(s)	167, 177, 334, 442, 713, 716
Sau3AI	GATC	5 cut(s)	191, 361, 406, 429, 604
Sau96I	GGNCC	3 cut(s)	88, 203, 699
SchI	GAGTC	2 cut(s)	512, 653
ScrFI	CCNGG	3 cut(s)	119, 490, 704
SfaNI	GCATC	2 cut(s)	142, 198
SfcI	CTRYAG	2 cut(s)	241, 459
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	748
Sse9I	AATT	1 cut(s)	557
SsiI	CCGC	7 cut(s)	29, 166, 176, 441, 499, 713, 716
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	3 cut(s)	117, 488, 702
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	3 cut(s)	432, 513, 614
TasI	AATT	1 cut(s)	557
TauI	GCSGC	5 cut(s)	169, 179, 444, 715, 718
TfiI	GAWTC	1 cut(s)	398
TscAI	CASTG	1 cut(s)	191
TseI	GCWGC	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	11, 412
TspRI	CASTG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	2 cut(s)	383, 748
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.