Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Reverse (-)

49622461 .. 49623067

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG275800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGATTTCTCACTCAAGAAATCCTTCAAATCTCTTAGCTCCAGTAAACACATCTCTACTGAAGTAGACCACAGCAGCCATGAGAAGTTCCCCATTCTACTGGATCACCACAACAAACAACATGCAATGAGCGCCATTGATTCCTCCGACCGCCGCGAGGTCTTCGTCAAGATCGACGAGGGCGGTGCTTCCTCCACCACTACAGAAGCCGACCCCACGAAACTCGGCGCCGGGATTTGGCGGGAGTCCAGTATCGATTTCTGGAAGGACGACGGGAGCAATGTCTGCTCCGGCGGGGAATTTGAGTTTGGTCGGAAGAAGAAGACGGCGGCAAAGACTGAGGAGGATCCGCTGTCGAAGCTGATAGGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

124

Amino Acids

13.74

Weight (kDa)

6.29

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	156
AciI	CCGC	7 cut(s)	151, 154, 183, 241, 294, 329, 350
AclWI	GGATC	3 cut(s)	111, 341, 354
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	157, 237
AgsI	TTSAA	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	2 cut(s)	39, 361
AluI	AGCT	2 cut(s)	39, 361
AlwI	GGATC	3 cut(s)	111, 341, 354
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	134, 230
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	154, 329
BbvI	GCAGC	1 cut(s)	87
BceAI	ACGGC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcnI	CCSGG	1 cut(s)	232
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	2 cut(s)	135, 231
BisI	GCNGC	3 cut(s)	76, 154, 330
BlsI	GCNGC	3 cut(s)	77, 155, 331
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	229, 348
BmrFI	CCNGG	1 cut(s)	232
BpiI	GAAGAC	2 cut(s)	154, 329
BpmI	CTGGAG	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 237
Bse1I	ACTGG	3 cut(s)	42, 105, 249
Bse3DI	GCAATG	2 cut(s)	132, 286
BseCI	ATCGAT	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	157, 237
BseMI	GCAATG	2 cut(s)	132, 286
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	42, 105, 249
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	231, 291
BslI	CCNNNNNNNGG	2 cut(s)	157, 237
Bsp143I	GATC	3 cut(s)	103, 171, 346
BspACI	CCGC	7 cut(s)	151, 154, 183, 241, 294, 329, 350
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	229, 348
BspPI	GGATC	3 cut(s)	111, 341, 354
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	132, 286
BsrI	ACTGG	3 cut(s)	42, 105, 249
BssMI	GATC	3 cut(s)	103, 171, 346
BssNI	GRCGYC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	35, 339
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	2 cut(s)	135, 231
BstHHI	GCGC	2 cut(s)	134, 230
BstKTI	GATC	3 cut(s)	106, 174, 349
BstMBI	GATC	3 cut(s)	103, 171, 346
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 285, 358
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	2 cut(s)	154, 329
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
CfoI	GCGC	2 cut(s)	134, 230
ClaI	ATCGAT	1 cut(s)	255
CviAII	CATG	2 cut(s)	80, 122
CviJI	RGCY	4 cut(s)	39, 78, 209, 361
CviKI_1	RGCY	4 cut(s)	39, 78, 209, 361
DdeI	CTNAG	2 cut(s)	35, 339
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	3 cut(s)	105, 173, 348
DpnII	GATC	3 cut(s)	103, 171, 346
Eco57I	CTGAAG	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
FaeI	CATG	2 cut(s)	83, 125
FaiI	YATR	2 cut(s)	81, 123
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	2 cut(s)	79, 121
FauI	CCCGC	2 cut(s)	234, 287
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	76, 154, 330
Fsp4HI	GCNGC	3 cut(s)	76, 154, 330
GlaI	GCGC	2 cut(s)	133, 229
GluI	GCNGC	3 cut(s)	76, 154, 330
GsuI	CTGGAG	1 cut(s)	25
HaeII	RGCGCY	2 cut(s)	135, 231
HapII	CCGG	2 cut(s)	231, 291
HhaI	GCGC	2 cut(s)	134, 230
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	83, 125
Hin6I	GCGC	2 cut(s)	132, 228
HinP1I	GCGC	2 cut(s)	132, 228
HinfI	GANTC	2 cut(s)	140, 245
HpaII	CCGG	2 cut(s)	231, 291
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	47, 67
Hpy188I	TCNGA	2 cut(s)	148, 315
Hpy188III	TCNNGA	3 cut(s)	16, 169, 262
Hpy8I	GTNNAC	2 cut(s)	47, 67
Hpy99I	CGWCG	2 cut(s)	179, 275
HpyAV	CCTTC	2 cut(s)	34, 259
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 285, 358
HpyF3I	CTNAG	2 cut(s)	35, 339
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	83, 125
HspAI	GCGC	2 cut(s)	132, 228
KasI	GGCGCC	1 cut(s)	227
Kzo9I	GATC	3 cut(s)	103, 171, 346
LmnI	GCTCC	3 cut(s)	44, 276, 293
LpnPI	CCDG	6 cut(s)	55, 86, 244, 247, 262, 304
Lsp1109I	GCAGC	1 cut(s)	87
MalI	GATC	3 cut(s)	105, 173, 348
MboI	GATC	3 cut(s)	103, 171, 346
MboII	GAAGA	4 cut(s)	154, 328, 331, 334
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	1 cut(s)	299
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	2 cut(s)	171, 293
MnlI	CCTC	6 cut(s)	151, 154, 172, 202, 334, 337
MroXI	GAANNNNTTC	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	2 cut(s)	231, 291
MspR9I	CCNGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	131, 285, 358
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	3 cut(s)	103, 171, 346
NlaIII	CATG	2 cut(s)	83, 125
NlaIV	GGNNCC	2 cut(s)	229, 348
NmeAIII	GCCGAG	1 cut(s)	204
NspI	RCATGY	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	77, 155, 331
PleI	GAGTC	1 cut(s)	253
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	229, 348
PsuI	RGATCY	1 cut(s)	346
SatI	GCNGC	3 cut(s)	76, 154, 330
Sau3AI	GATC	3 cut(s)	103, 171, 346
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	3 cut(s)	41, 162, 363
SfcI	CTRYAG	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	7 cut(s)	151, 154, 183, 241, 294, 329, 350
SspDI	GGCGCC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	230
TaqI	TCGA	3 cut(s)	174, 255, 356
TasI	AATT	1 cut(s)	299
TauI	GCSGC	2 cut(s)	156, 332
TfiI	GAWTC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.