Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Reverse (-)

33572192 .. 33579105

Gene Structure 6914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAATTTCTCACTCAAGAAATCCTTCAAATCTCTTAGCTCCAGTAAACACATCTCTGCCGAAGCAGACCACAGCAGCCATGAGAAGCTCCCTATTCTACTGGATCACCACAACGAACAACATGCAATGATCACCGTCGATTCCTCTGACCGCCGCGAGATCTTCGTCAAGATCGATGAGGGCGGGGCTTCCTCCACCACTACAGAAGCCGACCCCACGAAACTCGGTGCCAGGATTTGGCAGGAGTCCAGTATCGATTTCTGGAAGGACGACTGGAGCAATGTCTGCTCCAGCGAGGAATTTGAGTTTGGTTGGAAGAAGAAGACGGCGGCGAAGACTGAGGAGGAGAAGGATCCGCCGCCTGCTGGTTCTGTGTATCTTGAAATAGGGTTAAATACGTTTGGCTCTTCCATGCTTGCCATCTCATTTAGGAGCAGAAGAGCGTCCAGCGACTCGTCGTTGGACATGGATTTGGAGATGGACGAGCTACGGCAGCAGGATTTGCCGCCGCTGGCGAAGTCTTCGAGGAACTCACGCACGTCTAGGGAGATCAAGGTGTCGGCGGTGGTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

192

Amino Acids

21.47

Weight (kDa)

5.41

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccII	CGCG	1 cut(s)	156
AciI	CCGC	9 cut(s)	151, 154, 183, 329, 356, 359, 506, 509, 563
AclWI	GGATC	3 cut(s)	111, 347, 360
AcsI	RAATTY	2 cut(s)	4, 299
AfiI	CCNNNNNNNGG	2 cut(s)	237, 365
AgsI	TTSAA	2 cut(s)	28, 383
AjiI	CACGTC	1 cut(s)	540
AjnI	CCWGG	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	3 cut(s)	39, 88, 487
AluI	AGCT	3 cut(s)	39, 88, 487
AlwI	GGATC	3 cut(s)	111, 347, 360
ApeKI	GCWGC	2 cut(s)	75, 493
ApoI	RAATTY	2 cut(s)	4, 299
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	98, 124
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	3 cut(s)	329, 341, 513
BbvI	GCAGC	2 cut(s)	87, 505
BccI	CCATC	2 cut(s)	428, 472
BceAI	ACGGC	2 cut(s)	342, 506
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	232
BclI	TGATCA	1 cut(s)	129
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	201
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	7 cut(s)	76, 154, 330, 359, 494, 506, 509
BlsI	GCNGC	7 cut(s)	77, 155, 331, 360, 495, 507, 510
Bme1390I	CCNGG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	540
BmiI	GGNNCC	2 cut(s)	229, 354
BmrFI	CCNGG	1 cut(s)	232
BpiI	GAAGAC	3 cut(s)	329, 341, 513
BpmI	CTGGAG	3 cut(s)	25, 274, 295
Bsa29I	ATCGAT	2 cut(s)	174, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 365
Bse1I	ACTGG	4 cut(s)	42, 105, 249, 278
Bse3DI	GCAATG	2 cut(s)	132, 286
BseBI	CCWGG	1 cut(s)	232
BseCI	ATCGAT	2 cut(s)	174, 255
BseLI	CCNNNNNNNGG	2 cut(s)	237, 365
BseMI	GCAATG	2 cut(s)	132, 286
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	4 cut(s)	42, 105, 249, 278
BseRI	GAGGAG	2 cut(s)	356, 359
BseXI	GCAGC	2 cut(s)	87, 505
Bsh1236I	CGCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	227
BshVI	ATCGAT	2 cut(s)	174, 255
BslI	CCNNNNNNNGG	2 cut(s)	237, 365
Bsp143I	GATC	6 cut(s)	103, 129, 159, 171, 352, 549
BspACI	CCGC	9 cut(s)	151, 154, 183, 329, 356, 359, 506, 509, 563
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	2 cut(s)	174, 255
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	229, 354
BspPI	GGATC	3 cut(s)	111, 347, 360
BspQI	GCTCTTC	2 cut(s)	412, 433
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	132, 286
BsrI	ACTGG	4 cut(s)	42, 105, 249, 278
BssMI	GATC	6 cut(s)	103, 129, 159, 171, 352, 549
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	412, 433
BstAPI	GCANNNNNTGC	2 cut(s)	285, 502
BstC8I	GCNNGC	3 cut(s)	363, 417, 513
BstDEI	CTNAG	2 cut(s)	35, 339
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	6 cut(s)	106, 132, 162, 174, 355, 552
BstMBI	GATC	6 cut(s)	103, 129, 159, 171, 352, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 493, 502
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	87, 505
BstV2I	GAAGAC	3 cut(s)	329, 341, 513
BstX2I	RGATCY	2 cut(s)	159, 352
BstYI	RGATCY	2 cut(s)	159, 352
Bsu15I	ATCGAT	2 cut(s)	174, 255
BsuTUI	ATCGAT	2 cut(s)	174, 255
BtrI	CACGTC	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	363, 417, 513
ClaI	ATCGAT	2 cut(s)	174, 255
CseI	GACGC	1 cut(s)	432
CviAII	CATG	4 cut(s)	80, 122, 412, 466
CviJI	RGCY	7 cut(s)	39, 78, 88, 188, 209, 405, 487
CviKI_1	RGCY	7 cut(s)	39, 78, 88, 188, 209, 405, 487
DdeI	CTNAG	2 cut(s)	35, 339
DpnI	GATC	6 cut(s)	105, 131, 161, 173, 354, 551
DpnII	GATC	6 cut(s)	103, 129, 159, 171, 352, 549
Eam1104I	CTCTTC	2 cut(s)	412, 433
EarI	CTCTTC	2 cut(s)	412, 433
EciI	GGCGGA	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	230
FaeI	CATG	4 cut(s)	83, 125, 415, 469
FaiI	YATR	4 cut(s)	81, 123, 413, 467
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	4 cut(s)	79, 121, 411, 465
FauI	CCCGC	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	7 cut(s)	76, 154, 330, 359, 494, 506, 509
Fsp4HI	GCNGC	7 cut(s)	76, 154, 330, 359, 494, 506, 509
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	7 cut(s)	76, 154, 330, 359, 494, 506, 509
GsuI	CTGGAG	3 cut(s)	25, 274, 295
HgaI	GACGC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	83, 125, 415, 469
HinfI	GANTC	3 cut(s)	140, 245, 452
HphI	GGTGA	2 cut(s)	98, 124
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	4 cut(s)	16, 169, 262, 380
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	2 cut(s)	140, 460
HpyAV	CCTTC	3 cut(s)	34, 259, 343
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	398, 539
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 493, 502
HpyF3I	CTNAG	2 cut(s)	35, 339
HpySE526I	ACGT	2 cut(s)	398, 539
Hsp92II	CATG	4 cut(s)	83, 125, 415, 469
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	6 cut(s)	103, 129, 159, 171, 352, 549
LguI	GCTCTTC	2 cut(s)	412, 433
LmnI	GCTCC	5 cut(s)	44, 93, 276, 293, 432
Lsp1109I	GCAGC	2 cut(s)	87, 505
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	398, 539
MalI	GATC	6 cut(s)	105, 131, 161, 173, 354, 551
MboI	GATC	6 cut(s)	103, 129, 159, 171, 352, 549
MboII	GAAGA	8 cut(s)	154, 328, 331, 334, 346, 399, 450, 513
MflI	RGATCY	2 cut(s)	159, 352
MluCI	AATT	2 cut(s)	4, 299
MlyI	GAGTC	2 cut(s)	254, 446
MmeI	TCCRAC	2 cut(s)	293, 441
MnlI	CCTC	7 cut(s)	154, 172, 202, 289, 334, 337, 519
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	285, 493, 502
NdeII	GATC	6 cut(s)	103, 129, 159, 171, 352, 549
NlaIII	CATG	4 cut(s)	83, 125, 415, 469
NlaIV	GGNNCC	2 cut(s)	229, 354
NspI	RCATGY	1 cut(s)	125
PciSI	GCTCTTC	2 cut(s)	412, 433
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	7 cut(s)	77, 155, 331, 360, 495, 507, 510
PleI	GAGTC	2 cut(s)	253, 446
PpsI	GAGTC	2 cut(s)	253, 446
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	229, 354
PsuI	RGATCY	2 cut(s)	159, 352
SapI	GCTCTTC	2 cut(s)	412, 433
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	7 cut(s)	76, 154, 330, 359, 494, 506, 509
Sau3AI	GATC	6 cut(s)	103, 129, 159, 171, 352, 549
SchI	GAGTC	2 cut(s)	254, 446
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	6 cut(s)	41, 90, 401, 489, 542, 558
SfcI	CTRYAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	4, 299
SsiI	CCGC	9 cut(s)	151, 154, 183, 329, 356, 359, 506, 509, 563
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	401, 542
TaqI	TCGA	4 cut(s)	138, 174, 255, 524
TasI	AATT	2 cut(s)	4, 299
TauI	GCSGC	5 cut(s)	156, 332, 361, 508, 511
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TseI	GCWGC	2 cut(s)	75, 493
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	237
XapI	RAATTY	2 cut(s)	4, 299
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.