Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Reverse (-)

75611324 .. 75611832

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG475100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGATTTCTCACTCAAGAAATCCTTCAAATCTCTTAGCTCCAGTAAACACATCTCTGCCGAAGCAGACCGCAGCAGCCACGAGAAGCTCCCCATTCTACTGGATCACCACAACGAACAACATGCAATGAGCGCCGTTGATTCCTCCAACCGCCGCGAGGTCTTCATCAAGATCGACGAGGGCGGTGCTTCCTCTACCACTACAGAAGCCGACCCCACGAAACTCGGCGCCGAGATTTGGCGGAGTCCAATATTGATTTCTGGAAGGACGACGAGAGCAATGTTTGCTCCAGTCGGCAATTTGAGTTTGGTCAGAAGAAGAAGACGGCGGCGAAGATTGAGGAGGAGGAGGAGGATCCGCAGTCAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

123

Amino Acids

14.09

Weight (kDa)

11.65

Isoelectric Point (pI)

107.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	1 cut(s)	156
AciI	CCGC	7 cut(s)	70, 151, 154, 183, 241, 328, 358
AclWI	GGATC	3 cut(s)	111, 349, 362
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	157, 237
AgsI	TTSAA	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	3 cut(s)	39, 88, 369
AluI	AGCT	3 cut(s)	39, 88, 369
AlwI	GGATC	3 cut(s)	111, 349, 362
ApeKI	GCWGC	2 cut(s)	72, 75
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	134, 230
AsuHPI	GGTGA	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	2 cut(s)	154, 328
BbvI	GCAGC	2 cut(s)	84, 87
BceAI	ACGGC	2 cut(s)	119, 341
BcgI	CGANNNNNNTGC	4 cut(s)	104, 138, 167, 201
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	2 cut(s)	135, 231
BisI	GCNGC	4 cut(s)	73, 76, 154, 329
BlsI	GCNGC	4 cut(s)	74, 77, 155, 330
BmiI	GGNNCC	2 cut(s)	229, 356
BpiI	GAAGAC	2 cut(s)	154, 328
BpmI	CTGGAG	2 cut(s)	25, 273
BsaHI	GRCGYC	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 237
Bse1I	ACTGG	3 cut(s)	42, 105, 290
Bse3DI	GCAATG	2 cut(s)	132, 285
BseLI	CCNNNNNNNGG	2 cut(s)	157, 237
BseMI	GCAATG	2 cut(s)	132, 285
BseNI	ACTGG	3 cut(s)	42, 105, 290
BseRI	GAGGAG	4 cut(s)	355, 358, 361, 364
BseXI	GCAGC	2 cut(s)	84, 87
Bsh1236I	CGCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	157, 237
Bsp143I	GATC	3 cut(s)	103, 171, 354
BspACI	CCGC	7 cut(s)	70, 151, 154, 183, 241, 328, 358
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	229, 356
BspPI	GGATC	3 cut(s)	111, 349, 362
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	132, 285
BsrI	ACTGG	3 cut(s)	42, 105, 290
BssMI	GATC	3 cut(s)	103, 171, 354
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	2 cut(s)	135, 231
BstHHI	GCGC	2 cut(s)	134, 230
BstKTI	GATC	3 cut(s)	106, 174, 357
BstMBI	GATC	3 cut(s)	103, 171, 354
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 284, 366
BstNSI	RCATGY	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	84, 87
BstV2I	GAAGAC	2 cut(s)	154, 328
BstX2I	RGATCY	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	354
CfoI	GCGC	2 cut(s)	134, 230
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	5 cut(s)	39, 78, 88, 209, 369
CviKI_1	RGCY	5 cut(s)	39, 78, 88, 209, 369
DdeI	CTNAG	1 cut(s)	35
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	3 cut(s)	105, 173, 356
DpnII	GATC	3 cut(s)	103, 171, 354
EciI	GGCGGA	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
FaeI	CATG	1 cut(s)	125
FaiI	YATR	1 cut(s)	123
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	73, 76, 154, 329
Fsp4HI	GCNGC	4 cut(s)	73, 76, 154, 329
GlaI	GCGC	2 cut(s)	133, 229
GluI	GCNGC	4 cut(s)	73, 76, 154, 329
GsuI	CTGGAG	2 cut(s)	25, 273
HaeII	RGCGCY	2 cut(s)	135, 231
HhaI	GCGC	2 cut(s)	134, 230
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	2 cut(s)	132, 228
HinP1I	GCGC	2 cut(s)	132, 228
HinfI	GANTC	2 cut(s)	140, 244
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	3 cut(s)	16, 169, 261
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	2 cut(s)	179, 274
HpyAV	CCTTC	2 cut(s)	34, 258
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 284, 366
HpyF3I	CTNAG	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	2 cut(s)	132, 228
KasI	GGCGCC	1 cut(s)	227
Kzo9I	GATC	3 cut(s)	103, 171, 354
LmnI	GCTCC	3 cut(s)	44, 93, 292
LpnPI	CCDG	4 cut(s)	55, 86, 246, 303
Lsp1109I	GCAGC	2 cut(s)	84, 87
MalI	GATC	3 cut(s)	105, 173, 356
MboI	GATC	3 cut(s)	103, 171, 354
MboII	GAAGA	5 cut(s)	154, 327, 330, 333, 345
MflI	RGATCY	1 cut(s)	354
MluCI	AATT	1 cut(s)	298
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	9 cut(s)	151, 154, 172, 202, 333, 336, 339, 342, 345
MroXI	GAANNNNTTC	1 cut(s)	23
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	131, 284, 366
NarI	GGCGCC	1 cut(s)	228
NdeII	GATC	3 cut(s)	103, 171, 354
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	2 cut(s)	229, 356
NmeAIII	GCCGAG	2 cut(s)	204, 256
NspI	RCATGY	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	74, 77, 155, 330
PleI	GAGTC	1 cut(s)	252
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	229, 356
PsuI	RGATCY	1 cut(s)	354
SatI	GCNGC	4 cut(s)	73, 76, 154, 329
Sau3AI	GATC	3 cut(s)	103, 171, 354
SchI	GAGTC	1 cut(s)	253
SetI	ASST	4 cut(s)	41, 90, 162, 371
SfcI	CTRYAG	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	7 cut(s)	70, 151, 154, 183, 241, 328, 358
SspDI	GGCGCC	1 cut(s)	227
SspI	AATATT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	174
TasI	AATT	1 cut(s)	298
TauI	GCSGC	2 cut(s)	156, 331
TfiI	GAWTC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	72, 75
TspDTI	ATGAA	1 cut(s)	154
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.