Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Forward (+)

27273246 .. 27273791

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG258700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGATTTCTCACTCAAGAAATCCTTCAAATCTCTTGGCTCCAGTAAACACATCTCTTCCGAAGCAGACCACAGCAGCCACGAGAAGCTCCCCATTCTACTGGATCACCATAACGAACAGCACGCAATGAGCGTCGTCGATACCTCTAACTGTCGCAAGGTCTTCGTTAAGATCGACGAGGGCGGCGCTTCCTCCACCACTACAGAAGCTGACCCCACGAAACTTGGCACTGGGATTTGGCTGGAGTCTAGTATCGATTTCTGGAAGGACGACCAGAACAATGTAAGCTCCGGTGGGGAATTTGAGTTTGGTCAGAAGAAGAAGACGGCGGCGAAAATTGAGGAGGAGAAGGATCCGCCGTCGAAGCTGATAGGGAGGTTCCTGCACAAGCAGAGAGCGTCCGACGACTCGTTGTTGGACATGGATTTGGAGATGGACGAGCTACGGCAGCAGGATTTGCTACCGCTGGTGGAGTCTCTGAGGAACTCACGCACGTCAAGGGAGATCAAGGTGTCCTGGGTGAGGAGACGGCGGTGGTCTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

181

Amino Acids

20.56

Weight (kDa)

6.17

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	183, 329, 356, 464, 532
AclWI	GGATC	3 cut(s)	111, 347, 360
AcsI	RAATTY	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	522
AgsI	TTSAA	1 cut(s)	28
AjiI	CACGTC	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	515
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	5 cut(s)	88, 209, 288, 367, 442
AluI	AGCT	5 cut(s)	88, 209, 288, 367, 442
Alw26I	GTCTC	2 cut(s)	480, 520
AlwI	GGATC	3 cut(s)	111, 347, 360
AlwNI	CAGNNNCTG	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	75, 448
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	98, 532
BamHI	GGATCC	1 cut(s)	352
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	2 cut(s)	154, 329
BbvI	GCAGC	2 cut(s)	87, 460
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	3 cut(s)	342, 343, 461
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	480, 520
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	4 cut(s)	76, 184, 330, 449
BlsI	GCNGC	4 cut(s)	77, 185, 331, 450
Bme1390I	CCNGG	1 cut(s)	517
BmgBI	CACGTC	1 cut(s)	495
BmiI	GGNNCC	3 cut(s)	40, 354, 380
BmrFI	CCNGG	1 cut(s)	517
BmrI	ACTGGG	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	2 cut(s)	154, 329
BpmI	CTGGAG	2 cut(s)	25, 263
Bsa29I	ATCGAT	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse1I	ACTGG	3 cut(s)	42, 105, 235
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	517
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	3 cut(s)	42, 105, 235
BseRI	GAGGAG	3 cut(s)	356, 359, 538
BseXI	GCAGC	2 cut(s)	87, 460
BsgI	GTGCAG	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmAI	GTCTC	2 cut(s)	480, 520
BsmBI	CGTCTC	1 cut(s)	520
Bsp143I	GATC	4 cut(s)	103, 171, 352, 504
BspACI	CCGC	5 cut(s)	183, 329, 356, 464, 532
BspCNI	CTCAG	1 cut(s)	471
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	40, 354, 380
BspPI	GGATC	3 cut(s)	111, 347, 360
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	3 cut(s)	42, 105, 235
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	4 cut(s)	103, 171, 352, 504
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	479
BstENI	CCTNNNNNAGG	1 cut(s)	520
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	4 cut(s)	106, 174, 355, 507
BstMAI	GTCTC	2 cut(s)	480, 520
BstMBI	GATC	4 cut(s)	103, 171, 352, 504
BstMWI	GCNNNNNNNGC	3 cut(s)	364, 448, 457
BstNI	CCWGG	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	515
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	87, 460
BstV2I	GAAGAC	2 cut(s)	154, 329
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	352
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	123
CaiI	CAGNNNCTG	1 cut(s)	209
CfoI	GCGC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	2 cut(s)	121, 387
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	421
CviJI	RGCY	8 cut(s)	39, 78, 88, 209, 241, 288, 367, 442
CviKI_1	RGCY	8 cut(s)	39, 78, 88, 209, 241, 288, 367, 442
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	4 cut(s)	105, 173, 354, 506
DpnII	GATC	4 cut(s)	103, 171, 352, 504
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	345
EcoNI	CCTNNNNNAGG	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	515
Esp3I	CGTCTC	1 cut(s)	520
FaeI	CATG	1 cut(s)	424
FaiI	YATR	2 cut(s)	111, 422
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	1 cut(s)	420
Fnu4HI	GCNGC	4 cut(s)	76, 184, 330, 449
Fsp4HI	GCNGC	4 cut(s)	76, 184, 330, 449
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	4 cut(s)	76, 184, 330, 449
GsuI	CTGGAG	2 cut(s)	25, 263
HaeII	RGCGCY	1 cut(s)	189
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	2 cut(s)	121, 387
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	424
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	3 cut(s)	245, 407, 473
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	98, 532
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	4 cut(s)	61, 315, 403, 480
Hpy188III	TCNNGA	2 cut(s)	16, 262
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	5 cut(s)	137, 140, 179, 364, 407
HpyAV	CCTTC	3 cut(s)	34, 259, 343
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	364, 448, 457
HpyF3I	CTNAG	1 cut(s)	479
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	1 cut(s)	424
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	103, 171, 352, 504
LmnI	GCTCC	3 cut(s)	44, 93, 293
Lsp1109I	GCAGC	2 cut(s)	87, 460
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	494
MalI	GATC	4 cut(s)	105, 173, 354, 506
MboI	GATC	4 cut(s)	103, 171, 352, 504
MboII	GAAGA	5 cut(s)	48, 154, 328, 331, 334
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	2 cut(s)	299, 336
MlyI	GAGTC	3 cut(s)	254, 401, 482
MmeI	TCCRAC	2 cut(s)	396, 426
MnlI	CCTC	8 cut(s)	154, 172, 202, 334, 337, 369, 474, 516
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	517
MwoI	GCNNNNNNNGC	3 cut(s)	364, 448, 457
NdeII	GATC	4 cut(s)	103, 171, 352, 504
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	3 cut(s)	40, 354, 380
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 171
PdmI	GAANNNNTTC	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	77, 185, 331, 450
PleI	GAGTC	3 cut(s)	253, 401, 481
PpsI	GAGTC	3 cut(s)	253, 401, 481
Psp6I	CCWGG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	3 cut(s)	40, 354, 380
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	4 cut(s)	76, 184, 330, 449
Sau3AI	GATC	4 cut(s)	103, 171, 352, 504
SchI	GAGTC	3 cut(s)	254, 401, 482
ScrFI	CCNGG	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	299, 336
SsiI	CCGC	5 cut(s)	183, 329, 356, 464, 532
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	4 cut(s)	138, 174, 255, 362
TasI	AATT	2 cut(s)	299, 336
TauI	GCSGC	2 cut(s)	186, 332
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	75, 448
TspRI	CASTG	1 cut(s)	235
XagI	CCTNNNNNAGG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.