Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Reverse (-)

23545318 .. 23546772

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGATTTCTCACTCAAGAAATCATTCAAATCTCTTAGCGCTAGTAAACACATCTCTGCCGAAGCAGACCACAGCAGCCACGAGAAGCTCCCCATTCTACTGGATCACCACAATGAACAACATGTAATGAGCGCCGTTGATTCCTCCAATCGCCGCGAGGTCTTCGTCAAGATCGACGAGGGCAACGCTTCCTCCACCACTACAGAAGCCGATCCCATGAAACTCGGCGCCGGGATTTGGCGGGAGTCTAATATCGATTTCTGGAAGGACGACGGGAGCAATGTCTGCTCCGGCGGGGAATTTGAGTTTGGTCGGAAGAAGAAGACGGCAGCGAAGACTGAGGAGGAGGAGGAGGATCCGCCGTCAAAGCTGATAGGGAGATCCCGCACAACCAGAGAGCTTCCGGCGACTCGTCTTTGGACATGGATGAGCTACGGCCGCAGGATTTGCCGCCGCTGGCGGAGTCTCCGAGGAATTCACGCACGTCTAGGCGTGCAGGGTGGGGTGAAGCTGTTTATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

175

Amino Acids

19.75

Weight (kDa)

9.14

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	1 cut(s)	156
AciI	CCGC	9 cut(s)	154, 241, 294, 359, 385, 439, 451, 454, 460
AclWI	GGATC	5 cut(s)	111, 206, 350, 363, 375
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	299, 474
AcyI	GRCGYC	1 cut(s)	228
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	28
AjiI	CACGTC	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	5 cut(s)	88, 370, 400, 432, 511
AluI	AGCT	5 cut(s)	88, 370, 400, 432, 511
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	5 cut(s)	111, 206, 350, 363, 375
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	75, 329
ApoI	RAATTY	2 cut(s)	299, 474
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	3 cut(s)	41, 134, 230
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	98, 517
BamHI	GGATCC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	3 cut(s)	154, 329, 341
BbvI	GCAGC	2 cut(s)	87, 341
BceAI	ACGGC	4 cut(s)	119, 342, 346, 451
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	2 cut(s)	42, 488
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	3 cut(s)	42, 135, 231
BisI	GCNGC	6 cut(s)	76, 154, 330, 439, 451, 454
BlsI	GCNGC	6 cut(s)	77, 155, 331, 440, 452, 455
Bme1390I	CCNGG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	229, 357
BmrFI	CCNGG	1 cut(s)	232
BpiI	GAAGAC	3 cut(s)	154, 329, 341
BpuMI	CCSGG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	286
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	469
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	4 cut(s)	356, 359, 362, 365
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	87, 341
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	439
BsiSI	CCGG	3 cut(s)	231, 291, 404
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	103, 171, 211, 355, 380
BspACI	CCGC	9 cut(s)	154, 241, 294, 359, 385, 439, 451, 454, 460
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	229, 357
BspPI	GGATC	5 cut(s)	111, 206, 350, 363, 375
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	5 cut(s)	103, 171, 211, 355, 380
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	2 cut(s)	285, 447
BstC8I	GCNNGC	2 cut(s)	458, 494
BstDEI	CTNAG	2 cut(s)	35, 339
BstF5I	GGATG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	3 cut(s)	42, 135, 231
BstHHI	GCGC	3 cut(s)	41, 134, 230
BstKTI	GATC	5 cut(s)	106, 174, 214, 358, 383
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	5 cut(s)	103, 171, 211, 355, 380
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 367, 438, 447
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	87, 341
BstV2I	GAAGAC	3 cut(s)	154, 329, 341
BstX2I	RGATCY	2 cut(s)	355, 380
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	2 cut(s)	355, 380
BstZI	CGGCCG	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	438
BsuTUI	ATCGAT	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	458, 494
CfoI	GCGC	3 cut(s)	41, 134, 230
ClaI	ATCGAT	1 cut(s)	255
CviAII	CATG	3 cut(s)	122, 217, 423
CviJI	RGCY	8 cut(s)	78, 88, 209, 370, 400, 432, 438, 511
CviKI_1	RGCY	8 cut(s)	78, 88, 209, 370, 400, 432, 438, 511
DdeI	CTNAG	2 cut(s)	35, 339
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	5 cut(s)	105, 173, 213, 357, 382
DpnII	GATC	5 cut(s)	103, 171, 211, 355, 380
EaeI	YGGCCR	1 cut(s)	436
EagI	CGGCCG	1 cut(s)	436
EciI	GGCGGA	2 cut(s)	348, 475
EclXI	CGGCCG	1 cut(s)	436
Eco47III	AGCGCT	1 cut(s)	40
Eco52I	CGGCCG	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
FaeI	CATG	3 cut(s)	125, 220, 426
FaiI	YATR	4 cut(s)	123, 218, 424, 518
FatI	CATG	3 cut(s)	121, 216, 422
FauI	CCCGC	3 cut(s)	234, 287, 392
Fnu4HI	GCNGC	6 cut(s)	76, 154, 330, 439, 451, 454
FokI	GGATG	1 cut(s)	439
Fsp4HI	GCNGC	6 cut(s)	76, 154, 330, 439, 451, 454
FspBI	CTAG	2 cut(s)	42, 488
GlaI	GCGC	3 cut(s)	40, 133, 229
GluI	GCNGC	6 cut(s)	76, 154, 330, 439, 451, 454
HaeII	RGCGCY	3 cut(s)	42, 135, 231
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	3 cut(s)	231, 291, 404
HhaI	GCGC	3 cut(s)	41, 134, 230
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	125, 220, 426
Hin6I	GCGC	3 cut(s)	39, 132, 228
HinP1I	GCGC	3 cut(s)	39, 132, 228
HinfI	GANTC	4 cut(s)	140, 245, 409, 463
HpaII	CCGG	3 cut(s)	231, 291, 404
HphI	GGTGA	2 cut(s)	98, 517
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	315, 470
Hpy188III	TCNNGA	3 cut(s)	16, 169, 262
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	2 cut(s)	179, 275
HpyAV	CCTTC	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	1 cut(s)	496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 367, 438, 447
HpyF3I	CTNAG	2 cut(s)	35, 339
HpySE526I	ACGT	1 cut(s)	484
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	125, 220, 426
HspAI	GCGC	3 cut(s)	39, 132, 228
KasI	GGCGCC	1 cut(s)	227
Kzo9I	GATC	5 cut(s)	103, 171, 211, 355, 380
LmnI	GCTCC	3 cut(s)	93, 276, 293
LpnPI	CCDG	9 cut(s)	86, 244, 247, 304, 406, 417, 427, 442, 482
Lsp1109I	GCAGC	2 cut(s)	87, 341
MaeI	CTAG	2 cut(s)	42, 488
MaeII	ACGT	1 cut(s)	484
MalI	GATC	5 cut(s)	105, 173, 213, 357, 382
MboI	GATC	5 cut(s)	103, 171, 211, 355, 380
MboII	GAAGA	5 cut(s)	154, 328, 331, 334, 346
MflI	RGATCY	2 cut(s)	355, 380
MluCI	AATT	2 cut(s)	299, 474
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	3 cut(s)	254, 403, 472
MmeI	TCCRAC	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	3 cut(s)	231, 291, 404
MspR9I	CCNGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	4 cut(s)	285, 367, 438, 447
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	5 cut(s)	103, 171, 211, 355, 380
NlaIII	CATG	3 cut(s)	125, 220, 426
NlaIV	GGNNCC	2 cut(s)	229, 357
NmeAIII	GCCGAG	1 cut(s)	204
NspI	RCATGY	1 cut(s)	125
PciI	ACATGT	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	6 cut(s)	77, 155, 331, 440, 452, 455
PleI	GAGTC	3 cut(s)	253, 403, 471
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	3 cut(s)	253, 403, 471
PscI	ACATGT	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	229, 357
PsuI	RGATCY	2 cut(s)	355, 380
RseI	CAYNNNNRTG	1 cut(s)	111
SatI	GCNGC	6 cut(s)	76, 154, 330, 439, 451, 454
Sau3AI	GATC	5 cut(s)	103, 171, 211, 355, 380
SchI	GAGTC	3 cut(s)	254, 403, 472
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	7 cut(s)	90, 162, 372, 402, 434, 487, 513
SfcI	CTRYAG	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	299, 474
SsiI	CCGC	9 cut(s)	154, 241, 294, 359, 385, 439, 451, 454, 460
SspDI	GGCGCC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	42, 488
StyD4I	CCNGG	1 cut(s)	230
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	2 cut(s)	174, 255
TasI	AATT	2 cut(s)	299, 474
TauI	GCSGC	4 cut(s)	156, 441, 453, 456
TfiI	GAWTC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	75, 329
TspDTI	ATGAA	2 cut(s)	129, 233
XapI	RAATTY	2 cut(s)	299, 474
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	2 cut(s)	42, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.