Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Forward (+)

2141711 .. 2142157

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG033000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGATTTCTCACTCAAGAAATCCTTCAAATCTCTTAGCGCCAGTAAACACATCTCTGCCGAAGCAGACCACAGCAGCCACGAGAAGCTCCCCATTCTACTGGATCACCACAACGAACAACATGCAATGAGCGCCGTTGATTCCTCCGACCGCCGCGAGGTCTTCGTCAAGATCGACGAGGGCGGTGCTTCCTCCACCACTACAGAAGCCGACCCCACGAAACTCGGAGCCGGGATTTGGCGGGAGTCCAGTATCGATTTCTGGAAGGACGACGGGAGCAATGTCTGCTCCGGCGGGGAATTTGAGTTTGGTCGGAAGAAGAAGACGGCGGCGAAGACTGAGGAGGAGGATATGCAGTCGAAGCTGATGGGGAGGTTCCTGCACAAGCAGACAGCGTCCGGCGACTCGTCGTTGGACATGGATTTGGAGATGGACGAGCTACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

148

Amino Acids

16.44

Weight (kDa)

5.21

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	6 cut(s)	151, 154, 183, 241, 294, 329
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	157, 237
AgsI	TTSAA	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	3 cut(s)	88, 364, 439
AluI	AGCT	3 cut(s)	88, 364, 439
AlwI	GGATC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	41, 134
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	98
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	3 cut(s)	154, 329, 341
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	361, 424
BceAI	ACGGC	2 cut(s)	119, 342
BcgI	CGANNNNNNTGC	4 cut(s)	104, 138, 167, 201
BcnI	CCSGG	1 cut(s)	232
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	2 cut(s)	42, 135
BisI	GCNGC	3 cut(s)	76, 154, 330
BlsI	GCNGC	3 cut(s)	77, 155, 331
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	229, 377
BmrFI	CCNGG	1 cut(s)	232
BpiI	GAAGAC	3 cut(s)	154, 329, 341
BpuMI	CCSGG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 237
Bse1I	ACTGG	3 cut(s)	42, 105, 249
Bse3DI	GCAATG	2 cut(s)	132, 286
BseCI	ATCGAT	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	157, 237
BseMI	GCAATG	2 cut(s)	132, 286
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	42, 105, 249
BseRI	GAGGAG	2 cut(s)	356, 359
BseXI	GCAGC	1 cut(s)	87
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	151
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	3 cut(s)	231, 291, 399
BslI	CCNNNNNNNGG	2 cut(s)	157, 237
Bsp143I	GATC	2 cut(s)	103, 171
BspACI	CCGC	6 cut(s)	151, 154, 183, 241, 294, 329
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	229, 377
BspPI	GGATC	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	132, 286
BsrI	ACTGG	3 cut(s)	42, 105, 249
BssMI	GATC	2 cut(s)	103, 171
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	35, 339
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	2 cut(s)	42, 135
BstHHI	GCGC	2 cut(s)	41, 134
BstKTI	GATC	2 cut(s)	106, 174
BstMBI	GATC	2 cut(s)	103, 171
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 285, 361
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	3 cut(s)	154, 329, 341
BstXI	CCANNNNNNTGG	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
CfoI	GCGC	2 cut(s)	41, 134
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	384
CviAII	CATG	2 cut(s)	122, 418
CviJI	RGCY	6 cut(s)	78, 88, 209, 230, 364, 439
CviKI_1	RGCY	6 cut(s)	78, 88, 209, 230, 364, 439
DdeI	CTNAG	2 cut(s)	35, 339
DpnI	GATC	2 cut(s)	105, 173
DpnII	GATC	2 cut(s)	103, 171
FaeI	CATG	2 cut(s)	125, 421
FaiI	YATR	3 cut(s)	123, 353, 419
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	2 cut(s)	121, 417
FauI	CCCGC	2 cut(s)	234, 287
Fnu4HI	GCNGC	3 cut(s)	76, 154, 330
Fsp4HI	GCNGC	3 cut(s)	76, 154, 330
GlaI	GCGC	2 cut(s)	40, 133
GluI	GCNGC	3 cut(s)	76, 154, 330
HaeII	RGCGCY	2 cut(s)	42, 135
HapII	CCGG	3 cut(s)	231, 291, 399
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	2 cut(s)	41, 134
Hin1II	CATG	2 cut(s)	125, 421
Hin6I	GCGC	2 cut(s)	39, 132
HinP1I	GCGC	2 cut(s)	39, 132
HinfI	GANTC	3 cut(s)	140, 245, 404
HpaII	CCGG	3 cut(s)	231, 291, 399
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	3 cut(s)	148, 227, 315
Hpy188III	TCNNGA	3 cut(s)	16, 169, 262
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	3 cut(s)	179, 275, 412
HpyAV	CCTTC	2 cut(s)	34, 259
HpyCH4V	TGCA	3 cut(s)	125, 355, 382
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 285, 361
HpyF3I	CTNAG	2 cut(s)	35, 339
Hsp92II	CATG	2 cut(s)	125, 421
HspAI	GCGC	2 cut(s)	39, 132
Kzo9I	GATC	2 cut(s)	103, 171
LmnI	GCTCC	4 cut(s)	93, 227, 276, 293
LpnPI	CCDG	8 cut(s)	55, 86, 244, 247, 262, 304, 392, 412
Lsp1109I	GCAGC	1 cut(s)	87
MalI	GATC	2 cut(s)	105, 173
MboI	GATC	2 cut(s)	103, 171
MboII	GAAGA	5 cut(s)	154, 328, 331, 334, 346
MluCI	AATT	1 cut(s)	299
MlyI	GAGTC	2 cut(s)	254, 398
MmeI	TCCRAC	3 cut(s)	171, 293, 393
MnlI	CCTC	8 cut(s)	151, 154, 172, 202, 334, 337, 340, 366
MroXI	GAANNNNTTC	1 cut(s)	23
MspI	CCGG	3 cut(s)	231, 291, 399
MspR9I	CCNGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	131, 285, 361
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	2 cut(s)	103, 171
NlaIII	CATG	2 cut(s)	125, 421
NlaIV	GGNNCC	2 cut(s)	229, 377
NspI	RCATGY	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	394
PkrI	GCNGC	3 cut(s)	77, 155, 331
PleI	GAGTC	2 cut(s)	253, 398
PpsI	GAGTC	2 cut(s)	253, 398
PspN4I	GGNNCC	2 cut(s)	229, 377
PsyI	GACNNNGTC	1 cut(s)	394
SatI	GCNGC	3 cut(s)	76, 154, 330
Sau3AI	GATC	2 cut(s)	103, 171
SchI	GAGTC	2 cut(s)	254, 398
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	5 cut(s)	90, 162, 366, 377, 441
SfcI	CTRYAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	6 cut(s)	151, 154, 183, 241, 294, 329
StyD4I	CCNGG	1 cut(s)	230
TaqI	TCGA	3 cut(s)	174, 255, 359
TasI	AATT	1 cut(s)	299
TauI	GCSGC	2 cut(s)	156, 332
TfiI	GAWTC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	75
Tth111I	GACNNNGTC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.