Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Forward (+)

81191756 .. 81192109

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG593600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGCGCCGTTGATTCCTCCGATCGCCGCGAGGTCTTCATCAAGATCGACGAGGGCGGCGCTTCCTCCACAACTACAAAAGCCGACCACACGAAACTCGGCGCCGGGATTTGGCGGGAGTCTAGTATCGATTTTTGGAAGGACGACGGGAGCAATGTCTACTCCGGCTGGGAATTTGAGTTTGGTCGGAAGAAGAAGACGGCAGCGAAGACTGAGGAGGAGGAGGATCCGTCATCGAAGCTGATAGGGAGGTTCCTGCAGAAGCAGAGAGCGTCGGCGACTCGTCGCTGGACATGGATTTGGAGATGGACGAGCTACGGCCGCAAGATTTGCCGTCGCTGGCGGAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

117

Amino Acids

13.69

Weight (kDa)

9.8

Isoelectric Point (pI)

61.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	1 cut(s)	30
AciI	CCGC	5 cut(s)	28, 57, 115, 322, 343
AclWI	GGATC	2 cut(s)	221, 234
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	111
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	2 cut(s)	241, 315
AluI	AGCT	2 cut(s)	241, 315
AlwI	GGATC	2 cut(s)	221, 234
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	3 cut(s)	8, 62, 104
AsuC2I	CCSGG	1 cut(s)	106
BamHI	GGATCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	101
BbsI	GAAGAC	3 cut(s)	28, 203, 215
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	1 cut(s)	300
BceAI	ACGGC	3 cut(s)	216, 318, 334
BcnI	CCSGG	1 cut(s)	106
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	257
BfoI	RGCGCY	3 cut(s)	9, 63, 105
BisI	GCNGC	4 cut(s)	28, 58, 204, 322
BlsI	GCNGC	4 cut(s)	29, 59, 205, 323
Bme1390I	CCNGG	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	103, 228, 254
BmrFI	CCNGG	1 cut(s)	106
BpiI	GAAGAC	3 cut(s)	28, 203, 215
BpuMI	CCSGG	1 cut(s)	106
Bsa29I	ATCGAT	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	160
BseCI	ATCGAT	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	3 cut(s)	230, 233, 236
BseX3I	CGGCCG	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	215
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	2 cut(s)	25, 322
BshFI	GGCC	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	2 cut(s)	25, 322
BsiSI	CCGG	2 cut(s)	105, 165
BslI	CCNNNNNNNGG	1 cut(s)	111
BsnI	GGCC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	22, 45, 226
BspACI	CCGC	5 cut(s)	28, 57, 115, 322, 343
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	103, 228, 254
BspMAI	CTGCAG	1 cut(s)	261
BspPI	GGATC	2 cut(s)	221, 234
BspT107I	GGYRCC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	160
BssMI	GATC	3 cut(s)	22, 45, 226
BssNI	GRCGYC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	3 cut(s)	9, 63, 105
BstHHI	GCGC	3 cut(s)	8, 62, 104
BstKTI	GATC	3 cut(s)	25, 48, 229
BstMBI	GATC	3 cut(s)	22, 45, 226
BstMCI	CGRYCG	2 cut(s)	25, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 330
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	257
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	3 cut(s)	28, 203, 215
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BstZI	CGGCCG	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	3 cut(s)	8, 62, 104
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	261
CviAII	CATG	1 cut(s)	294
CviJI	RGCY	5 cut(s)	83, 168, 241, 315, 321
CviKI_1	RGCY	5 cut(s)	83, 168, 241, 315, 321
DdeI	CTNAG	1 cut(s)	213
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	3 cut(s)	24, 47, 228
DpnII	GATC	3 cut(s)	22, 45, 226
EaeI	YGGCCR	1 cut(s)	319
EagI	CGGCCG	1 cut(s)	319
EclXI	CGGCCG	1 cut(s)	319
Eco52I	CGGCCG	1 cut(s)	319
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
FaeI	CATG	1 cut(s)	297
FaiI	YATR	1 cut(s)	295
FatI	CATG	1 cut(s)	293
FauI	CCCGC	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	28, 58, 204, 322
Fsp4HI	GCNGC	4 cut(s)	28, 58, 204, 322
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	3 cut(s)	7, 61, 103
GluI	GCNGC	4 cut(s)	28, 58, 204, 322
GsaI	CCCAGC	1 cut(s)	172
HaeII	RGCGCY	3 cut(s)	9, 63, 105
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	2 cut(s)	105, 165
HgaI	GACGC	1 cut(s)	261
HhaI	GCGC	3 cut(s)	8, 62, 104
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	297
Hin6I	GCGC	3 cut(s)	6, 60, 102
HinP1I	GCGC	3 cut(s)	6, 60, 102
HinfI	GANTC	4 cut(s)	14, 119, 280, 346
HpaII	CCGG	2 cut(s)	105, 165
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	22, 189, 353
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	5 cut(s)	53, 149, 277, 288, 339
HpyAV	CCTTC	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 330
HpyF3I	CTNAG	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	297
HspAI	GCGC	3 cut(s)	6, 60, 102
KasI	GGCGCC	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	22, 45, 226
LmnI	GCTCC	1 cut(s)	150
LpnPI	CCDG	6 cut(s)	118, 154, 178, 269, 274, 325
Lsp1109I	GCAGC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	123
MalI	GATC	3 cut(s)	24, 47, 228
MboI	GATC	3 cut(s)	22, 45, 226
MboII	GAAGA	5 cut(s)	28, 202, 205, 208, 220
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	1 cut(s)	173
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	128, 274
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	9 cut(s)	25, 28, 46, 76, 208, 211, 214, 217, 243
MspI	CCGG	2 cut(s)	105, 165
MspR9I	CCNGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	321, 330
NarI	GGCGCC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	3 cut(s)	22, 45, 226
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	3 cut(s)	103, 228, 254
NmeAIII	GCCGAG	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	29, 59, 205, 323
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	2 cut(s)	127, 274
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	2 cut(s)	127, 274
PspFI	CCCAGC	1 cut(s)	168
PspN4I	GGNNCC	3 cut(s)	103, 228, 254
PstI	CTGCAG	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	226
PvuI	CGATCG	1 cut(s)	25
SatI	GCNGC	4 cut(s)	28, 58, 204, 322
Sau3AI	GATC	3 cut(s)	22, 45, 226
SchI	GAGTC	2 cut(s)	128, 274
ScrFI	CCNGG	1 cut(s)	106
SetI	ASST	4 cut(s)	36, 243, 254, 317
SfcI	CTRYAG	1 cut(s)	257
SfoI	GGCGCC	1 cut(s)	103
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	5 cut(s)	28, 57, 115, 322, 343
SspDI	GGCGCC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	104
TaqI	TCGA	3 cut(s)	48, 129, 236
TasI	AATT	1 cut(s)	173
TauI	GCSGC	3 cut(s)	30, 60, 324
TfiI	GAWTC	1 cut(s)	14
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	219
XapI	RAATTY	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.