Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Reverse (-)

85000697 .. 85001113

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG626000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGCGACGTCGATCCCTCCGACCGCCGCGAGGTCATCGTCAAGATCGACGAGAGCGGCGCTTCCTCCACCACTACAGAAGCTAACCTCGCGAAACTCGGTGTCGGGATTTGGCGGGAGTCCAGTATCAATTTCTGGAAAGACGACTGGACCAAAGTCAGCTCCGGCGGGGAATTTGAGTTTGCTCGGAAAAAGAAGACGACGGCGAAGACTGAGGAGGAGGATCCGCCGTCAAAGCTGATAGGGAGGTTCCTGCACAAGCATAGAGCGTCCGGCGACTCGTTGTTGGACATGGATTTGGAGATGGGCGAGCTACGGCTGCAGGATTTGCCGCTGCTGGCAGAGTCTCCGAGGAACTCACGCACATCGAGGGAGATCAAGGTGTCATCAGTGAGGAGACGGCGGTGGTCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

138

Amino Acids

15.73

Weight (kDa)

9.0

Isoelectric Point (pI)

65.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	57
AccII	CGCG	2 cut(s)	30, 92
AciI	CCGC	8 cut(s)	25, 28, 57, 115, 168, 227, 332, 403
AclWI	GGATC	3 cut(s)	8, 218, 231
AcsI	RAATTY	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	31
AluBI	AGCT	4 cut(s)	83, 162, 238, 313
AluI	AGCT	4 cut(s)	83, 162, 238, 313
Alw26I	GTCTC	2 cut(s)	351, 391
AlwI	GGATC	3 cut(s)	8, 218, 231
ApeKI	GCWGC	2 cut(s)	319, 334
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	223
BbsI	GAAGAC	2 cut(s)	203, 215
BbvI	GCAGC	2 cut(s)	306, 321
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	3 cut(s)	214, 219, 332
BcoDI	GTCTC	2 cut(s)	351, 391
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	2 cut(s)	75, 320
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	5 cut(s)	28, 58, 320, 332, 335
BlsI	GCNGC	5 cut(s)	29, 59, 321, 333, 336
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	225, 251
BoxI	GACNNNNGTC	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	203, 215
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	123, 152
BseDI	CCNNGG	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	123, 152
BseRI	GAGGAG	3 cut(s)	230, 233, 409
BseXI	GCAGC	2 cut(s)	306, 321
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	2 cut(s)	30, 92
Bsh1285I	CGRYCG	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	165, 273
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	351, 391
BsmBI	CGTCTC	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	13, 45, 223, 375
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	8 cut(s)	25, 28, 57, 115, 168, 227, 332, 403
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	2 cut(s)	30, 92
BspLI	GGNNCC	2 cut(s)	225, 251
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	3 cut(s)	8, 218, 231
BsrBI	CCGCTC	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	123, 152
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	4 cut(s)	13, 45, 223, 375
BssNI	GRCGYC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	311, 339
BstDEI	CTNAG	1 cut(s)	213
BstFNI	CGCG	2 cut(s)	30, 92
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	4 cut(s)	16, 48, 226, 378
BstMAI	GTCTC	2 cut(s)	351, 391
BstMBI	GATC	4 cut(s)	13, 45, 223, 375
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 235, 319, 328
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSFI	CTRYAG	2 cut(s)	75, 320
BstUI	CGCG	2 cut(s)	30, 92
BstV1I	GCAGC	2 cut(s)	306, 321
BstV2I	GAAGAC	2 cut(s)	203, 215
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	396
BtuMI	TCGCGA	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	311, 339
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	1 cut(s)	258
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	5 cut(s)	83, 162, 238, 313, 319
CviKI_1	RGCY	5 cut(s)	83, 162, 238, 313, 319
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	4 cut(s)	15, 47, 225, 377
DpnII	GATC	4 cut(s)	13, 45, 223, 375
EciI	GGCGGA	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	391
FaeI	CATG	1 cut(s)	295
FaiI	YATR	2 cut(s)	264, 293
FatI	CATG	1 cut(s)	291
FauI	CCCGC	2 cut(s)	108, 161
Fnu4HI	GCNGC	5 cut(s)	28, 58, 320, 332, 335
Fsp4HI	GCNGC	5 cut(s)	28, 58, 320, 332, 335
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	5 cut(s)	28, 58, 320, 332, 335
HaeII	RGCGCY	1 cut(s)	63
HapII	CCGG	2 cut(s)	165, 273
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	3 cut(s)	119, 278, 344
HpaII	CCGG	2 cut(s)	165, 273
Hpy188I	TCNGA	3 cut(s)	22, 189, 351
Hpy188III	TCNNGA	4 cut(s)	43, 91, 106, 136
Hpy99I	CGWCG	4 cut(s)	11, 14, 53, 205
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	256, 322
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 235, 319, 328
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	4 cut(s)	13, 45, 223, 375
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	8 cut(s)	121, 133, 136, 178, 266, 286, 308, 323
Lsp1109I	GCAGC	2 cut(s)	306, 321
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	9
MalI	GATC	4 cut(s)	15, 47, 225, 377
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	4 cut(s)	13, 45, 223, 375
MboII	GAAGA	2 cut(s)	208, 220
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	2 cut(s)	130, 173
MlyI	GAGTC	3 cut(s)	128, 272, 353
MmeI	TCCRAC	2 cut(s)	45, 267
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	2 cut(s)	165, 273
MvnI	CGCG	2 cut(s)	30, 92
MwoI	GCNNNNNNNGC	4 cut(s)	89, 235, 319, 328
NdeII	GATC	4 cut(s)	13, 45, 223, 375
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	2 cut(s)	225, 251
NruI	TCGCGA	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 45
PkrI	GCNGC	5 cut(s)	29, 59, 321, 333, 336
PleI	GAGTC	3 cut(s)	127, 272, 352
PpsI	GAGTC	3 cut(s)	127, 272, 352
PshAI	GACNNNNGTC	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	225, 251
PspPI	GGNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	223
RruI	TCGCGA	1 cut(s)	92
SatI	GCNGC	5 cut(s)	28, 58, 320, 332, 335
Sau3AI	GATC	4 cut(s)	13, 45, 223, 375
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	3 cut(s)	128, 272, 353
SfcI	CTRYAG	2 cut(s)	75, 320
SinI	GGWCC	1 cut(s)	150
Sse9I	AATT	2 cut(s)	130, 173
SsiI	CCGC	8 cut(s)	25, 28, 57, 115, 168, 227, 332, 403
SspMI	CTAG	1 cut(s)	411
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	12, 48, 368
TasI	AATT	2 cut(s)	130, 173
TauI	GCSGC	3 cut(s)	30, 60, 334
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	2 cut(s)	319, 334
TspRI	CASTG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	173
XspI	CTAG	1 cut(s)	411
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.