Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Reverse (-)

8410767 .. 8415447

Gene Structure 4681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTAAACACGTCGCTATGTCAAAGTGCATGGTTATGGCTGACTTGCCATTGATAACTTCCTCTTCCTGTCATTCACTGATGCCTTGTATCGATTTCTGGAAGGACGACGGGAGCAATGTCTGCTCTGGCGGGGAATTTGAGTTTGGTCGGAAGAAGAAGACGGCGGTGAAGACTGAGGAGGAGGAGGAGGAGGAGGATCTGCCGTCGAAGCAGATAGGGAGGTTCCTGCACAAGCAGAGAGTGTCCGACAACTCGTCATTGGACATGGATTTGGAGATGGACGAGCTACAGCCGCAGGATTTGCCGTCGTTGGCGGAGTCTCCGAGGAACTCACGCACGTCCAGGGAGATCAAGGTGTCGTCGGTGAGGAGACGGCGGTGGTCTAGAATACACTTACCGCCAGGAGCCGATTGCCATAAGCACCAAGCATCAGGAAACGTCGGAGGAGGTTGGCTCTGCGAAACCGAGGGACAGTCTCCCAGTCCAGAAAGCCAGCTACATCTGTTGGTAGAAGGTGTTACGGCACGCGCCGCTGACTTGGTCGACGATGGCAGAGCGACGATCAGAGTGGAGGTCGGAGAGGTTGATGGTGGGGATTGGTTGGGCGTCGGGTCGGGTCGTGGGCTGCAACTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

214

Amino Acids

23.41

Weight (kDa)

5.3

Isoelectric Point (pI)

77.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	531
AciI	CCGC	7 cut(s)	132, 167, 296, 317, 379, 401, 534
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	609
AflIII	ACRYGT	1 cut(s)	10
AhdI	GACNNNNNGTC	1 cut(s)	256
AjiI	CACGTC	2 cut(s)	13, 342
AjnI	CCWGG	2 cut(s)	344, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	2 cut(s)	289, 499
AluI	AGCT	2 cut(s)	289, 499
Alw26I	GTCTC	3 cut(s)	327, 367, 483
AlwI	GGATC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	628
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	181, 379
BbsI	GAAGAC	2 cut(s)	167, 179
BbvI	GCAGC	1 cut(s)	615
BccI	CCATC	3 cut(s)	274, 545, 584
BceAI	ACGGC	5 cut(s)	180, 190, 292, 392, 540
BciT130I	CCWGG	2 cut(s)	346, 405
BcoDI	GTCTC	3 cut(s)	327, 367, 483
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	290
BisI	GCNGC	3 cut(s)	296, 534, 629
BlsI	GCNGC	3 cut(s)	297, 535, 630
Bme1390I	CCNGG	2 cut(s)	346, 405
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmgBI	CACGTC	2 cut(s)	13, 342
BmiI	GGNNCC	2 cut(s)	227, 409
BmrFI	CCNGG	2 cut(s)	346, 405
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	2 cut(s)	72, 440
BmuI	ACTGGG	1 cut(s)	477
BpiI	GAAGAC	2 cut(s)	167, 179
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	609
BsaJI	CCNNGG	3 cut(s)	326, 345, 468
Bse1I	ACTGG	1 cut(s)	483
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	346, 405
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	326, 345, 468
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	8 cut(s)	194, 197, 200, 203, 206, 209, 385, 462
BseXI	GCAGC	1 cut(s)	615
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	531
BshVI	ATCGAT	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	486
BsmAI	GTCTC	3 cut(s)	327, 367, 483
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	199, 351, 564
BspACI	CCGC	7 cut(s)	132, 167, 296, 317, 379, 401, 534
BspCNI	CTCAG	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	227, 409
BspPI	GGATC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	3 cut(s)	326, 345, 468
BssMI	GATC	3 cut(s)	199, 351, 564
BssNI	GRCGYC	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	346, 405
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	609
BstAPI	GCANNNNNTGC	2 cut(s)	123, 304
BstC8I	GCNNGC	2 cut(s)	497, 529
BstDEI	CTNAG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	3 cut(s)	202, 354, 567
BstMAI	GTCTC	3 cut(s)	327, 367, 483
BstMBI	GATC	3 cut(s)	199, 351, 564
BstMWI	GCNNNNNNNGC	6 cut(s)	123, 211, 295, 304, 533, 634
BstNI	CCWGG	2 cut(s)	346, 405
BstSCI	CCNGG	2 cut(s)	344, 403
BstSFI	CTRYAG	1 cut(s)	290
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	615
BstV2I	GAAGAC	2 cut(s)	167, 179
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	93
BtrI	CACGTC	2 cut(s)	13, 342
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	497, 529
CfoI	GCGC	1 cut(s)	533
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	598
CviAII	CATG	2 cut(s)	31, 268
CviJI	RGCY	9 cut(s)	5, 41, 289, 295, 410, 457, 495, 499, 628
CviKI_1	RGCY	9 cut(s)	5, 41, 289, 295, 410, 457, 495, 499, 628
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	201, 353, 566
DpnII	GATC	3 cut(s)	199, 351, 564
DriI	GACNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	344, 403
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	2 cut(s)	34, 271
FaiI	YATR	5 cut(s)	20, 32, 38, 269, 420
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	2 cut(s)	30, 267
FauI	CCCGC	1 cut(s)	125
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	296, 534, 629
Fsp4HI	GCNGC	3 cut(s)	296, 534, 629
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	3 cut(s)	296, 534, 629
HgaI	GACGC	1 cut(s)	598
HhaI	GCGC	1 cut(s)	533
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	2 cut(s)	34, 271
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	2 cut(s)	181, 379
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	6 cut(s)	153, 250, 327, 446, 569, 581
Hpy188III	TCNNGA	4 cut(s)	100, 387, 435, 488
Hpy8I	GTNNAC	1 cut(s)	547
Hpy99I	CGWCG	9 cut(s)	17, 113, 211, 313, 367, 446, 551, 565, 614
HpyAV	CCTTC	2 cut(s)	97, 509
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	3 cut(s)	12, 341, 441
HpyCH4V	TGCA	3 cut(s)	30, 232, 631
HpyF10VI	GCNNNNNNNGC	6 cut(s)	123, 211, 295, 304, 533, 634
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	3 cut(s)	12, 341, 441
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	2 cut(s)	34, 271
HspAI	GCGC	1 cut(s)	531
Kzo9I	GATC	3 cut(s)	199, 351, 564
LmnI	GCTCC	2 cut(s)	114, 407
Lsp1109I	GCAGC	1 cut(s)	615
LweI	GCATC	2 cut(s)	72, 440
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	3 cut(s)	12, 341, 441
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	3 cut(s)	201, 353, 566
MboI	GATC	3 cut(s)	199, 351, 564
MboII	GAAGA	5 cut(s)	57, 166, 169, 172, 184
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	4 cut(s)	131, 273, 424, 559
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	536
MspR9I	CCNGG	2 cut(s)	346, 405
MvaI	CCWGG	2 cut(s)	346, 405
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	6 cut(s)	123, 211, 295, 304, 533, 634
NdeII	GATC	3 cut(s)	199, 351, 564
NlaIII	CATG	2 cut(s)	34, 271
NlaIV	GGNNCC	2 cut(s)	227, 409
PflFI	GACNNNGTC	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	297, 535, 630
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	344, 403
PspGI	CCWGG	2 cut(s)	344, 403
PspN4I	GGNNCC	2 cut(s)	227, 409
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	545
SatI	GCNGC	3 cut(s)	296, 534, 629
Sau3AI	GATC	3 cut(s)	199, 351, 564
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	346, 405
SfaNI	GCATC	2 cut(s)	72, 440
SfcI	CTRYAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	7 cut(s)	132, 167, 296, 317, 379, 401, 534
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	344, 403
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	3 cut(s)	15, 344, 444
TaqI	TCGA	3 cut(s)	93, 209, 546
TasI	AATT	1 cut(s)	137
TauI	GCSGC	2 cut(s)	298, 536
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	1 cut(s)	628
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.