Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008385.1

Orthogroup ID

OG0014844

Physical Location & Seq

Genomic Coordinates Forward (+)

46834 .. 48705

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008385.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgtggtttgggtttcttcggcaaggtgagctcgaaggggttgccttgtggtggtattctaccggcgggcctgctgggaagaaggaagatgattgcggcggttgttctttcattttgtttaaaattgtgtttttgcctgggatagatttctcactcaagaaatccttcaaatctcttagctccagtaaacacatctctgccgaagcagacaacagcagccacgagaagatccccattctactagatcaccacaacgaacaacatgcaatgagcgtcgttgattcctccgaccgccgcgaggtcttcgtcaagatcgacgagggtggtgcttcctccaccactacagaagccgaccccacgaaacttggcttcgggatttggccggagtccagtatcgatttctggaaggacgacgggagcaatgtctgcttcggcggggaatttgagtttggtcgaaagaagaagacggcggcgaagattgaggaggaggatctgcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

166

Amino Acids

18.42

Weight (kDa)

5.02

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125101 RchiOBHm_Chr2g0136031
rosa_laevigata	RLG00000000953 RLG00000008724 RLG00000012893 RLG00000033872
rosa_multiflora	Rmu_sc0005947.1_g000030 Rmu_sc0008385.1_g000014
rosa_samantha	Rh1DG246100 Rh2AG336900 Rh2AG626000 Rh2BG258700 Rh2BG593600 Rh2DG033000 Rh4DG275800 Rh5BG475100 Rh5CG498700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	297
AciI	CCGC	7 cut(s)	66, 96, 99, 292, 295, 435, 470
AclWI	GGATC	2 cut(s)	223, 498
AcoI	YGGCCR	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	51, 298
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	2 cut(s)	31, 180
AluI	AGCT	2 cut(s)	31, 180
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	223, 498
AoxI	GGCC	2 cut(s)	68, 380
ApeKI	GCWGC	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	38, 239
BanII	GRGCYC	1 cut(s)	33
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	295, 470
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	483
BcgI	CGANNNNNNTGC	6 cut(s)	23, 57, 245, 279, 308, 342
BciT130I	CCWGG	1 cut(s)	138
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	2 cut(s)	342, 494
BisI	GCNGC	4 cut(s)	97, 217, 295, 471
BlsI	GCNGC	4 cut(s)	98, 218, 296, 472
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	138
BpiI	GAAGAC	2 cut(s)	295, 470
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 298
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	183, 390
Bse3DI	GCAATG	2 cut(s)	273, 427
BseBI	CCWGG	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	51, 298
BseMI	GCAATG	2 cut(s)	273, 427
BseNI	ACTGG	2 cut(s)	183, 390
BseRI	GAGGAG	2 cut(s)	497, 500
BseXI	GCAGC	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	70, 382
BshVI	ATCGAT	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	63, 383
BslI	CCNNNNNNNGG	2 cut(s)	51, 298
BsnI	GGCC	2 cut(s)	70, 382
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	228, 244, 312, 490
BspACI	CCGC	7 cut(s)	66, 96, 99, 292, 295, 435, 470
BspANI	GGCC	2 cut(s)	70, 382
BspDI	ATCGAT	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	297
BspMAI	CTGCAG	1 cut(s)	498
BspPI	GGATC	2 cut(s)	223, 498
BsrDI	GCAATG	2 cut(s)	273, 427
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	183, 390
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	4 cut(s)	228, 244, 312, 490
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	68, 72
BstDEI	CTNAG	1 cut(s)	176
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	4 cut(s)	231, 247, 315, 493
BstMBI	GATC	4 cut(s)	228, 244, 312, 490
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 426
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	2 cut(s)	342, 494
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	228
BstV2I	GAAGAC	2 cut(s)	295, 470
BstX2I	RGATCY	2 cut(s)	228, 490
BstYI	RGATCY	2 cut(s)	228, 490
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	70, 382
BsuTUI	ATCGAT	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	68, 72
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	1 cut(s)	262
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	7 cut(s)	31, 70, 180, 219, 350, 369, 382
CviKI_1	RGCY	7 cut(s)	31, 70, 180, 219, 350, 369, 382
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	4 cut(s)	230, 246, 314, 492
DpnII	GATC	4 cut(s)	228, 244, 312, 490
DraI	TTTAAA	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	1 cut(s)	266
FaiI	YATR	1 cut(s)	264
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	1 cut(s)	262
FauI	CCCGC	2 cut(s)	59, 428
Fnu4HI	GCNGC	4 cut(s)	97, 217, 295, 471
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	4 cut(s)	97, 217, 295, 471
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	4 cut(s)	97, 217, 295, 471
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	70, 382
HapII	CCGG	2 cut(s)	63, 383
HgaI	GACGC	1 cut(s)	262
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	2 cut(s)	281, 386
HpaII	CCGG	2 cut(s)	63, 383
HphI	GGTGA	2 cut(s)	38, 239
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	4 cut(s)	157, 310, 373, 403
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	3 cut(s)	278, 320, 416
HpyAV	CCTTC	4 cut(s)	29, 76, 175, 400
HpyCH4V	TGCA	2 cut(s)	266, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 426
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	4 cut(s)	228, 244, 312, 490
LmnI	GCTCC	2 cut(s)	185, 417
LpnPI	CCDG	9 cut(s)	60, 76, 84, 123, 150, 196, 388, 396, 403
Lsp1109I	GCAGC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	242
MalI	GATC	4 cut(s)	230, 246, 314, 492
MboI	GATC	4 cut(s)	228, 244, 312, 490
MboII	GAAGA	8 cut(s)	8, 91, 98, 238, 295, 472, 475, 487
MflI	RGATCY	2 cut(s)	228, 490
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	123, 440
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	292, 295, 313, 343, 475, 478, 481
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	120
MspI	CCGG	2 cut(s)	63, 383
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	28, 426
NdeII	GATC	4 cut(s)	228, 244, 312, 490
NlaIII	CATG	1 cut(s)	266
NspI	RCATGY	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	98, 218, 296, 472
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	498
PsuI	RGATCY	2 cut(s)	228, 490
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	4 cut(s)	97, 217, 295, 471
Sau3AI	GATC	4 cut(s)	228, 244, 312, 490
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	4 cut(s)	28, 33, 182, 303
SfcI	CTRYAG	2 cut(s)	342, 494
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	123, 440
SsiI	CCGC	7 cut(s)	66, 96, 99, 292, 295, 435, 470
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	136
TaqI	TCGA	4 cut(s)	33, 315, 396, 454
TasI	AATT	2 cut(s)	123, 440
TauI	GCSGC	3 cut(s)	99, 297, 473
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	100
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.