RchiOBHm_Chr2g0159671

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008878
Physical Location & Seq
Forward (+)
75722727 .. 75723269
543 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52824

Sequence Viewer

Length: 543 bp
ATGGCTTTAAATTTTATACCAAAGCTGACCCCTCATCTTTCTCCAGTGTTTCTGCTCGTTCTATCCGTGACTGTATTTTTAGCACCTGTTGAGCAGTCTGGGTCTGAAAAAGAATTTGAGATGAAGTACTACATCATGGAAATCCAGTCTGGTCCCAATGCCACAGTGGTACCTGGTACAGGTATTGCCGGAAAGCTTTGGTCCCCGACCAACTGGGGAACAATTCTCGTCTGTCATAACCCGTTTGTTGAAGACCCAAGCCCATACTCACGAAAAGTTGGCCAAGTCCGGGGCTTGGAAGTGGCATCATCAAAAGACGGAGAGTACAACTATATTTGCTCTTCTACTATGTTCACAAGAAGCGAGTACAATGGCAGCACCTTACAGGCACAAGGAACATTCAACAGGGCTTCCAGGGGAGCTAGCGTGCTTTCGATCGTAGGAGGTACCGGAACGTTTAAGGGCGCTAGGGGAATTGCTATGCTTCAAACATATAGCGCCTCATTTTTACTATTCATCATCAAGTTTTCACTTCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

180

Amino Acids

19.54

Weight (kDa)

9.12

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 41 - 167 4.4e-26 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 169, 446
AccB1I GGYRCC 2 cut(s) 169, 446
AclI AACGTT 1 cut(s) 455
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 10, 113
AfaI GTAC 6 cut(s) 128, 171, 178, 326, 368, 448
AfiI CCNNNNNNNGG 3 cut(s) 179, 289, 295
AgsI TTSAA 3 cut(s) 251, 403, 488
AjnI CCWGG 2 cut(s) 172, 413
AluBI AGCT 3 cut(s) 25, 196, 422
AluI AGCT 3 cut(s) 25, 196, 422
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 375
ApoI RAATTY 2 cut(s) 10, 113
Asp718I GGTACC 2 cut(s) 169, 446
AspLEI GCGC 2 cut(s) 467, 500
AspS9I GGNCC 2 cut(s) 152, 201
AsuC2I CCSGG 1 cut(s) 290
AsuNHI GCTAGC 1 cut(s) 422
AvaII GGWCC 2 cut(s) 152, 201
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BalI TGGCCA 1 cut(s) 282
BanI GGYRCC 2 cut(s) 169, 446
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 387
BciT130I CCWGG 2 cut(s) 174, 415
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 2 cut(s) 423, 468
BfoI RGCGCY 2 cut(s) 468, 501
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 174, 290, 415
Bme18I GGWCC 2 cut(s) 152, 201
BmgT120I GGNCC 2 cut(s) 152, 201
BmiI GGNNCC 4 cut(s) 154, 171, 203, 448
BmrFI CCNGG 3 cut(s) 174, 290, 415
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 314
BmtI GCTAGC 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 289, 414
BsaWI WCCGGW 1 cut(s) 449
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 289, 295
Bse1I ACTGG 3 cut(s) 44, 145, 218
BseBI CCWGG 2 cut(s) 174, 415
BseDI CCNNGG 2 cut(s) 289, 414
BseLI CCNNNNNNNGG 3 cut(s) 179, 289, 295
BseNI ACTGG 3 cut(s) 44, 145, 218
BseXI GCAGC 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 2 cut(s) 169, 446
BsiEI CGRYCG 1 cut(s) 438
BsiSI CCGG 3 cut(s) 189, 289, 450
BslFI GGGAC 2 cut(s) 138, 187
BslI CCNNNNNNNGG 3 cut(s) 179, 289, 295
BsmFI GGGAC 2 cut(s) 138, 187
BsnI GGCC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 435
BspANI GGCC 1 cut(s) 282
BspLI GGNNCC 4 cut(s) 154, 171, 203, 448
BspOI GCTAGC 1 cut(s) 426
BspQI GCTCTTC 1 cut(s) 346
BspT107I GGYRCC 2 cut(s) 169, 446
BsrI ACTGG 3 cut(s) 44, 145, 218
BssECI CCNNGG 2 cut(s) 289, 414
BssMI GATC 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 174, 415
Bst4CI ACNGT 2 cut(s) 73, 166
Bst6I CTCTTC 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 424, 428
BstENI CCTNNNNNAGG 1 cut(s) 177
BstH2I RGCGCY 2 cut(s) 468, 501
BstHHI GCGC 2 cut(s) 467, 500
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstMCI CGRYCG 1 cut(s) 438
BstNI CCWGG 2 cut(s) 174, 415
BstSCI CCNGG 3 cut(s) 172, 288, 413
BstV1I GCAGC 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 51, 171
Cac8I GCNNGC 2 cut(s) 424, 428
CfoI GCGC 2 cut(s) 467, 500
Cfr13I GGNCC 2 cut(s) 152, 201
CsiI ACCWGGT 1 cut(s) 172
Csp6I GTAC 6 cut(s) 127, 170, 177, 325, 367, 447
CviAII CATG 1 cut(s) 136
CviJI RGCY 8 cut(s) 5, 25, 196, 261, 282, 294, 410, 422
CviKI_1 RGCY 8 cut(s) 5, 25, 196, 261, 282, 294, 410, 422
CviQI GTAC 6 cut(s) 127, 170, 177, 325, 367, 447
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
DraI TTTAAA 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 152, 201
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 172, 413
FaeI CATG 1 cut(s) 139
FaiI YATR 9 cut(s) 17, 137, 237, 265, 333, 350, 482, 493, 495
FaqI GGGAC 2 cut(s) 138, 187
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 2 cut(s) 423, 468
GlaI GCGC 2 cut(s) 466, 499
GluI GCNGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 2 cut(s) 468, 501
HaeIII GGCC 1 cut(s) 282
HapII CCGG 3 cut(s) 189, 289, 450
HhaI GCGC 2 cut(s) 467, 500
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 2 cut(s) 465, 498
HinP1I GCGC 2 cut(s) 465, 498
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 3 cut(s) 189, 289, 450
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 73, 166
HpyCH4IV ACGT 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 2 cut(s) 465, 498
KpnI GGTACC 2 cut(s) 173, 450
Kzo9I GATC 1 cut(s) 435
LguI GCTCTTC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 1 cut(s) 314
MabI ACCWGGT 1 cut(s) 172
MaeI CTAG 2 cut(s) 423, 468
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 2 cut(s) 263, 333
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 4 cut(s) 10, 113, 222, 474
MluNI TGGCCA 1 cut(s) 282
MnlI CCTC 3 cut(s) 42, 437, 511
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MseI TTAA 2 cut(s) 8, 459
Msp20I TGGCCA 1 cut(s) 282
MspI CCGG 3 cut(s) 189, 289, 450
MspR9I CCNGG 3 cut(s) 174, 290, 415
MvaI CCWGG 2 cut(s) 174, 415
NciI CCSGG 1 cut(s) 290
NdeII GATC 1 cut(s) 435
NheI GCTAGC 1 cut(s) 422
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 4 cut(s) 154, 171, 203, 448
NmuCI GTSAC 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PkrI GCNGC 1 cut(s) 377
Ple19I CGATCG 1 cut(s) 438
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 172, 413
PspGI CCWGG 2 cut(s) 172, 413
PspN4I GGNNCC 4 cut(s) 154, 171, 203, 448
PspPI GGNCC 2 cut(s) 152, 201
PvuI CGATCG 1 cut(s) 438
RsaI GTAC 6 cut(s) 128, 171, 178, 326, 368, 448
RsaNI GTAC 6 cut(s) 127, 170, 177, 325, 367, 447
SapI GCTCTTC 1 cut(s) 346
SaqAI TTAA 2 cut(s) 8, 459
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 2 cut(s) 152, 201
ScaI AGTACT 1 cut(s) 128
ScrFI CCNGG 3 cut(s) 174, 290, 415
SetI ASST 9 cut(s) 27, 88, 175, 184, 198, 383, 424, 448, 458
SexAI ACCWGGT 1 cut(s) 172
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 2 cut(s) 152, 201
Sse9I AATT 4 cut(s) 10, 113, 222, 474
SspMI CTAG 2 cut(s) 423, 468
StyD4I CCNGG 3 cut(s) 172, 288, 413
TaaI ACNGT 2 cut(s) 73, 166
TaiI ACGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 434
TasI AATT 4 cut(s) 10, 113, 222, 474
TatI WGTACW 3 cut(s) 126, 324, 366
Tru1I TTAA 2 cut(s) 8, 459
Tru9I TTAA 2 cut(s) 8, 459
TscAI CASTG 2 cut(s) 51, 171
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 137, 505
TspGWI ACGGA 2 cut(s) 55, 333
TspRI CASTG 2 cut(s) 51, 171
VpaK11BI GGWCC 2 cut(s) 152, 201
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 2 cut(s) 10, 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 2 cut(s) 423, 468
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.