Rmu_sc0011502.1_g000004

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011502.1
OG0008878
Physical Location & Seq
Reverse (-)
12346 .. 12825
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011502.1_g000004.1.cds

Sequence Viewer

Length: 480 bp
atggctttaaattttataccaaagctgacccctcatctttctccagtgtttctgctcgttctatccgtgactgtatttttagcacctgttgagcaatctgggtctgaaaaagaatttgagatgaagtactacatcatggaaatccagtctggtcccaatgccacagtggtacctggtacaggtattgccggaaagctttggtccccgaccaactggggaacaattctcgtctgttataacccgtttgttgaagacccaagcccatactcacgaaaagttggccaggtccggggcttggaagtggcatcatcaaaagacggagagtacgactttatttgctcttctactatgttcacaagaagcgagttttcgatcgtaggaggtaccggaacgtttaagggcgctaggggaattgctatgcttcaaacatatagcgcctcatttttactattcatcatcaagttttcacttcccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

159

Amino Acids

17.42

Weight (kDa)

7.73

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
Acc65I GGTACC 2 cut(s) 169, 383
AccB1I GGYRCC 2 cut(s) 169, 383
AclI AACGTT 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 10, 113
AfaI GTAC 5 cut(s) 128, 171, 178, 326, 385
AfiI CCNNNNNNNGG 3 cut(s) 179, 289, 295
AgsI TTSAA 2 cut(s) 251, 425
AjnI CCWGG 2 cut(s) 172, 282
AluBI AGCT 2 cut(s) 25, 196
AluI AGCT 2 cut(s) 25, 196
AoxI GGCC 1 cut(s) 280
ApoI RAATTY 2 cut(s) 10, 113
Asp718I GGTACC 2 cut(s) 169, 383
AspLEI GCGC 2 cut(s) 404, 437
AspS9I GGNCC 3 cut(s) 152, 201, 286
AsuC2I CCSGG 1 cut(s) 290
AvaII GGWCC 3 cut(s) 152, 201, 286
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BalI TGGCCA 1 cut(s) 282
BanI GGYRCC 2 cut(s) 169, 383
BbsI GAAGAC 1 cut(s) 258
BciT130I CCWGG 2 cut(s) 174, 284
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 2 cut(s) 405, 438
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 174, 284, 290
Bme18I GGWCC 3 cut(s) 152, 201, 286
BmgT120I GGNCC 3 cut(s) 152, 201, 286
BmiI GGNNCC 4 cut(s) 154, 171, 203, 385
BmrFI CCNGG 3 cut(s) 174, 284, 290
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 289, 295
Bse1I ACTGG 3 cut(s) 44, 145, 218
BseBI CCWGG 2 cut(s) 174, 284
BseDI CCNNGG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 179, 289, 295
BseNI ACTGG 3 cut(s) 44, 145, 218
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 2 cut(s) 169, 383
BsiEI CGRYCG 1 cut(s) 375
BsiSI CCGG 3 cut(s) 189, 289, 387
BslFI GGGAC 2 cut(s) 138, 187
BslI CCNNNNNNNGG 3 cut(s) 179, 289, 295
BsmFI GGGAC 2 cut(s) 138, 187
BsnI GGCC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 372
BspANI GGCC 1 cut(s) 282
BspLI GGNNCC 4 cut(s) 154, 171, 203, 385
BspQI GCTCTTC 1 cut(s) 346
BspT107I GGYRCC 2 cut(s) 169, 383
BsrI ACTGG 3 cut(s) 44, 145, 218
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 174, 284
Bst4CI ACNGT 2 cut(s) 73, 166
Bst6I CTCTTC 1 cut(s) 346
BstENI CCTNNNNNAGG 1 cut(s) 177
BstH2I RGCGCY 2 cut(s) 405, 438
BstHHI GCGC 2 cut(s) 404, 437
BstKTI GATC 1 cut(s) 375
BstMBI GATC 1 cut(s) 372
BstMCI CGRYCG 1 cut(s) 375
BstNI CCWGG 2 cut(s) 174, 284
BstSCI CCNGG 3 cut(s) 172, 282, 288
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 51, 171
CfoI GCGC 2 cut(s) 404, 437
Cfr13I GGNCC 3 cut(s) 152, 201, 286
CsiI ACCWGGT 1 cut(s) 172
Csp6I GTAC 5 cut(s) 127, 170, 177, 325, 384
CviAII CATG 1 cut(s) 136
CviJI RGCY 6 cut(s) 5, 25, 196, 261, 282, 294
CviKI_1 RGCY 6 cut(s) 5, 25, 196, 261, 282, 294
CviQI GTAC 5 cut(s) 127, 170, 177, 325, 384
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
DraI TTTAAA 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco47I GGWCC 3 cut(s) 152, 201, 286
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 172, 282
FaeI CATG 1 cut(s) 139
FaiI YATR 8 cut(s) 17, 137, 237, 265, 350, 419, 430, 432
FaqI GGGAC 2 cut(s) 138, 187
FatI CATG 1 cut(s) 135
FspBI CTAG 1 cut(s) 405
GlaI GCGC 2 cut(s) 403, 436
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 2 cut(s) 405, 438
HaeIII GGCC 1 cut(s) 282
HapII CCGG 3 cut(s) 189, 289, 387
HhaI GCGC 2 cut(s) 404, 437
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 2 cut(s) 402, 435
HinP1I GCGC 2 cut(s) 402, 435
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 3 cut(s) 189, 289, 387
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 73, 166
HpyCH4IV ACGT 1 cut(s) 392
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 2 cut(s) 402, 435
KpnI GGTACC 2 cut(s) 173, 387
Kzo9I GATC 1 cut(s) 372
LguI GCTCTTC 1 cut(s) 346
LweI GCATC 1 cut(s) 314
MabI ACCWGGT 1 cut(s) 172
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 2 cut(s) 263, 333
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 4 cut(s) 10, 113, 222, 411
MluNI TGGCCA 1 cut(s) 282
MnlI CCTC 3 cut(s) 42, 374, 448
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MseI TTAA 2 cut(s) 8, 396
Msp20I TGGCCA 1 cut(s) 282
MspI CCGG 3 cut(s) 189, 289, 387
MspR9I CCNGG 3 cut(s) 174, 284, 290
MvaI CCWGG 2 cut(s) 174, 284
NciI CCSGG 1 cut(s) 290
NdeII GATC 1 cut(s) 372
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 4 cut(s) 154, 171, 203, 385
NmuCI GTSAC 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 324
Ple19I CGATCG 1 cut(s) 375
PsiI TTATAA 1 cut(s) 237
Psp1406I AACGTT 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 172, 282
PspGI CCWGG 2 cut(s) 172, 282
PspN4I GGNNCC 4 cut(s) 154, 171, 203, 385
PspPI GGNCC 3 cut(s) 152, 201, 286
PvuI CGATCG 1 cut(s) 375
RsaI GTAC 5 cut(s) 128, 171, 178, 326, 385
RsaNI GTAC 5 cut(s) 127, 170, 177, 325, 384
SapI GCTCTTC 1 cut(s) 346
SaqAI TTAA 2 cut(s) 8, 396
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 3 cut(s) 152, 201, 286
ScaI AGTACT 1 cut(s) 128
ScrFI CCNGG 3 cut(s) 174, 284, 290
SetI ASST 8 cut(s) 27, 88, 175, 184, 198, 288, 385, 395
SexAI ACCWGGT 1 cut(s) 172
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 3 cut(s) 152, 201, 286
Sse9I AATT 4 cut(s) 10, 113, 222, 411
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 172, 282, 288
TaaI ACNGT 2 cut(s) 73, 166
TaiI ACGT 1 cut(s) 395
TaqI TCGA 1 cut(s) 371
TasI AATT 4 cut(s) 10, 113, 222, 411
TatI WGTACW 1 cut(s) 126
Tru1I TTAA 2 cut(s) 8, 396
Tru9I TTAA 2 cut(s) 8, 396
TscAI CASTG 2 cut(s) 51, 171
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 137, 442
TspGWI ACGGA 2 cut(s) 55, 333
TspRI CASTG 2 cut(s) 51, 171
VpaK11BI GGWCC 3 cut(s) 152, 201, 286
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 2 cut(s) 10, 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 405
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.