Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008878

Physical Location & Seq

Genomic Coordinates Reverse (-)

22718730 .. 22720205

Gene Structure 1476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0220700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGACAAAGCAGGTCTCTCTTGATCGTCACATCCAATCGCTCCTCCCTGTTGCATTGGCTTCTCTGCTTGTCCTTGGGACTACCCGACTATTCCTGGACACGTTGAAGAGCAACCACAGTTTTGTGTTTCAGCTATATGGCAGGTCAAGAGGTCAAGGAGAGAGACCAGCAGTGATTGTTTCCCCCGAGGATTGCATTGATGAAAGTTGTAATGTTTTTGAAGGAAAATGGGTATGGGATAACGAGTCATATGCTCCTCACTATACAGAAGAGAGCTGCCCCTACTTGGTGAAACAGGTTACATGCCAAAAGAATGGTAGGCCTGATTCTTACTACAAGAATTGGAGATGGCAACCCAATGACTGCAACCTCCCAAGGTTTGATCCATTGAAGCTACTACAGATTTTGAGGGGCAAAAGACTAATGTTTGTTGGAGACTCAGTACAGAGAGGCCAGTTTGAATCCATGGTCTGTATGGTACAATCTATACTTCCTCAAGGAAAGAAATCGCTCCAAAGGGTTCCACCTAGGAAGATATTCACAATCAAGGAGTTCGATGCCTCCATTGAGTACTACTGGGCTCCCTTTATTGTGGAGTCAATTTCAGATCATGCAACGAAGCATACTGTACTAAAACGGTTGGTGAAGCTCGATTCCATAGCTAAGCATGGCAAGCACTGGGAAGGAGTAGATATTTTGGTGTTTGAGAGCTATGTATGGTGGATGCACAAGCCTACAGTCAATGCTACATATGGATCTCCAAACGATGTCCAAGAATATAATGTCACTACTGCGTATAAATTGGCATTACAGACTTGGGCAGAATGGTTAGAATCAAGAATAAACCCAGAAAGGCAAAAGGTCTTCTTCATGAGTAAGTCAAGTATAACACGATTGAGGTATGACTTAATTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd Nucleotid_trans

Protein Analysis

305

Amino Acids

35.56

Weight (kDa)

8.99

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	68 - 123	2.6e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	124 - 294	2.4e-47	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008878)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43350
rosa_chinensis	RchiOBHm_Chr2g0159671 RchiOBHm_Chr6g0251691
rosa_laevigata	RLG00000001443 RLG00000021172
rosa_multiflora	Rmu_sc0011502.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033700 Rroxscaffold_1G00036140 Rroxscaffold_2G00090330
rosa_rugosa	Rorug02G0477700 Rorug05G0220600 Rorug05G0220700 Rorug06G0035000
rosa_samantha	Rh2AG544600 Rh2BG557400 Rh2CG527700 Rh2DG566500 Rh3BG266300 Rh6AG013600 Rh6AG092700 Rh6CG080300 Rh6DG075700
rosa_wichuraiana	Rw2G045040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AclWI	GGATC	2 cut(s)	377, 763
AfaI	GTAC	4 cut(s)	444, 480, 572, 630
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	106, 221, 391, 461
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	6 cut(s)	133, 276, 394, 649, 662, 711
AluI	AGCT	6 cut(s)	133, 276, 394, 649, 662, 711
Alw26I	GTCTC	3 cut(s)	19, 157, 429
AlwI	GGATC	2 cut(s)	377, 763
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	320, 451
ApeKI	GCWGC	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	536
AspA2I	CCTAGG	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	301, 655
AvaI	CYCGRG	1 cut(s)	185
AvrII	CCTAGG	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	856
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	3 cut(s)	19, 157, 429
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	2 cut(s)	398, 735
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	1 cut(s)	277
BlnI	CCTAGG	1 cut(s)	527
BlpI	GCTNAGC	1 cut(s)	663
BlsI	GCNGC	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	522, 582
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	2 cut(s)	586, 688
BmsI	GCATC	2 cut(s)	547, 714
BmuI	ACTGGG	2 cut(s)	586, 688
BpiI	GAAGAC	1 cut(s)	856
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	480
BsaI	GGTCTC	2 cut(s)	19, 157
BsaJI	CCNNGG	5 cut(s)	73, 186, 374, 465, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	454, 581, 683
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	5 cut(s)	73, 186, 374, 465, 527
BseGI	GGATG	2 cut(s)	30, 729
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	3 cut(s)	454, 581, 683
BseRI	GAGGAG	2 cut(s)	32, 246
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	2 cut(s)	322, 453
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	19, 157, 429
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	322, 453
Bso31I	GGTCTC	2 cut(s)	19, 157
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	4 cut(s)	22, 382, 607, 755
Bsp1720I	GCTNAGC	1 cut(s)	663
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	2 cut(s)	322, 453
BspCNI	CTCAG	1 cut(s)	452
BspHI	TCATGA	1 cut(s)	870
BspLI	GGNNCC	2 cut(s)	522, 582
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	377, 763
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	19, 157
BsrI	ACTGG	3 cut(s)	454, 581, 683
BssECI	CCNNGG	5 cut(s)	73, 186, 374, 465, 527
BssMI	GATC	4 cut(s)	22, 382, 607, 755
BssT1I	CCWWGG	4 cut(s)	73, 374, 465, 527
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	4 cut(s)	119, 628, 639, 739
Bst6I	CTCTTC	2 cut(s)	101, 264
BstC8I	GCNNGC	1 cut(s)	674
BstDEI	CTNAG	2 cut(s)	439, 663
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	30, 729
BstKTI	GATC	4 cut(s)	25, 385, 610, 758
BstMAI	GTCTC	3 cut(s)	19, 157, 429
BstMBI	GATC	4 cut(s)	22, 382, 607, 755
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	2 cut(s)	398, 735
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	856
BstX2I	RGATCY	1 cut(s)	755
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	755
BsuRI	GGCC	2 cut(s)	322, 453
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	30, 729
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	177, 676
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	674
CciI	TCATGA	1 cut(s)	870
Csp6I	GTAC	4 cut(s)	443, 479, 571, 629
CviAII	CATG	5 cut(s)	303, 466, 611, 668, 871
CviQI	GTAC	4 cut(s)	443, 479, 571, 629
DdeI	CTNAG	2 cut(s)	439, 663
DpnI	GATC	4 cut(s)	24, 384, 609, 757
DpnII	GATC	4 cut(s)	22, 382, 607, 755
Eam1104I	CTCTTC	2 cut(s)	101, 264
EarI	CTCTTC	2 cut(s)	101, 264
Eco130I	CCWWGG	4 cut(s)	73, 374, 465, 527
Eco147I	AGGCCT	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	583
Eco31I	GGTCTC	2 cut(s)	19, 157
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	4 cut(s)	73, 374, 465, 527
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	4 cut(s)	73, 374, 465, 527
FaeI	CATG	5 cut(s)	306, 469, 614, 671, 874
FalI	AAGNNNNNCTT	2 cut(s)	851, 883
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	5 cut(s)	302, 465, 610, 667, 870
FauNDI	CATATG	2 cut(s)	250, 751
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	2 cut(s)	17, 736
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	322, 453
Hin1II	CATG	5 cut(s)	306, 469, 614, 671, 874
HinfI	GANTC	7 cut(s)	245, 326, 437, 461, 596, 653, 833
HphI	GGTGA	2 cut(s)	301, 655
Hpy188I	TCNGA	2 cut(s)	607, 917
Hpy188III	TCNNGA	4 cut(s)	20, 147, 837, 871
HpyAV	CCTTC	2 cut(s)	215, 677
HpyCH4III	ACNGT	4 cut(s)	119, 628, 639, 739
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	5 cut(s)	53, 195, 366, 614, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	2 cut(s)	439, 663
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	306, 469, 614, 671, 874
Kzo9I	GATC	4 cut(s)	22, 382, 607, 755
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	4 cut(s)	45, 259, 516, 586
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	2 cut(s)	547, 714
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	26, 298, 784
MalI	GATC	4 cut(s)	24, 384, 609, 757
MboI	GATC	4 cut(s)	22, 382, 607, 755
MboII	GAAGA	5 cut(s)	118, 281, 544, 856, 859
MflI	RGATCY	1 cut(s)	755
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	4 cut(s)	340, 600, 800, 909
MlyI	GAGTC	3 cut(s)	254, 431, 605
MmeI	TCCRAC	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	1 cut(s)	908
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	673
NcoI	CCATGG	1 cut(s)	465
NdeI	CATATG	2 cut(s)	250, 751
NdeII	GATC	4 cut(s)	22, 382, 607, 755
NlaIII	CATG	5 cut(s)	306, 469, 614, 671, 874
NlaIV	GGNNCC	2 cut(s)	522, 582
NmuCI	GTSAC	2 cut(s)	26, 784
NspI	RCATGY	1 cut(s)	306
PagI	TCATGA	1 cut(s)	870
PceI	AGGCCT	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	4 cut(s)	326, 461, 653, 833
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	3 cut(s)	253, 431, 604
PpsI	GAGTC	3 cut(s)	253, 431, 604
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	522, 582
PsuI	RGATCY	1 cut(s)	755
RsaI	GTAC	4 cut(s)	444, 480, 572, 630
RsaNI	GTAC	4 cut(s)	443, 479, 571, 629
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	908
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	4 cut(s)	22, 382, 607, 755
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	3 cut(s)	254, 431, 605
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	2 cut(s)	547, 714
SfcI	CTRYAG	2 cut(s)	398, 735
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	4 cut(s)	340, 600, 800, 909
SseBI	AGGCCT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	4 cut(s)	73, 374, 465, 527
TaaI	ACNGT	4 cut(s)	119, 628, 639, 739
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	555, 651
TasI	AATT	4 cut(s)	340, 600, 800, 909
TatI	WGTACW	3 cut(s)	442, 570, 628
TfiI	GAWTC	4 cut(s)	326, 461, 653, 833
Tru1I	TTAA	1 cut(s)	908
Tru9I	TTAA	1 cut(s)	908
TscAI	CASTG	2 cut(s)	177, 683
TseFI	GTSAC	2 cut(s)	26, 784
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	2 cut(s)	26, 784
TspDTI	ATGAA	2 cut(s)	216, 859
TspRI	CASTG	2 cut(s)	177, 683
XceI	RCATGY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmaJI	CCTAGG	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.