Rroxscaffold_2G00090330

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008878
Physical Location & Seq
Reverse (-)
12096729 .. 12097581
853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090330.1

Sequence Viewer

Length: 543 bp
ATGGCTTTAAATTTTGTACCAAAGCTGACCCCTCATCTTTCTCCAGTGTTTCTGCTGGTTCTATCCGTGACTGTATTTTTAGCACCTGTTGAGCAATCTGGGTCTGAAAAAGAATTTGAGATGAAGTACTACATCATGGAAATCCAGTCTGGTCCCAATGCCACAGTGGTACCTGTTGCAGGTATTGCCGGAAAGCTTTGGTCCCCGACCAACTGGGGAACAATTCTGGTCTGTTCTAACCCGTTTGTTGAAGACCCAAGCCCATACTCACGAAAAGTTGGCCTAGTCTGGGGCTTGGTAGTGGCATCATCAAAAGACGGAAAGTACAACCATATTTCCTCTTCTACTATGTTCACAAGAAGCGATTACAATGGCAGCACCTTACAGGCACAAGGAACATTCAACAGGGCTTCCAGGGGAGCTAGCATGCTTTCGATCGTAGGAGGTACTGGAACGTTTAAGGGCGCTAGGGGAATTGCTATGCTTCAAACATATAGCGCCTCATTTTTACTATTCACCATCAAGTTTTCACTTCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

180

Amino Acids

19.44

Weight (kDa)

9.55

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 41 - 167 3.3e-26 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 170
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 169
AclI AACGTT 1 cut(s) 455
AcsI RAATTY 2 cut(s) 10, 113
AfaI GTAC 5 cut(s) 18, 128, 171, 326, 448
AfiI CCNNNNNNNGG 2 cut(s) 179, 289
AgsI TTSAA 3 cut(s) 251, 403, 488
AjnI CCWGG 1 cut(s) 413
AluBI AGCT 3 cut(s) 25, 196, 422
AluI AGCT 3 cut(s) 25, 196, 422
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 375
ApoI RAATTY 2 cut(s) 10, 113
Asp718I GGTACC 1 cut(s) 169
AspLEI GCGC 2 cut(s) 467, 500
AspS9I GGNCC 2 cut(s) 152, 201
AsuHPI GGTGA 1 cut(s) 508
AsuNHI GCTAGC 1 cut(s) 422
AvaII GGWCC 2 cut(s) 152, 201
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 387
BccI CCATC 1 cut(s) 527
BciT130I CCWGG 1 cut(s) 415
BfaI CTAG 3 cut(s) 284, 423, 468
BfoI RGCGCY 2 cut(s) 468, 501
BfuAI ACCTGC 1 cut(s) 170
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 415
Bme18I GGWCC 2 cut(s) 152, 201
BmgT120I GGNCC 2 cut(s) 152, 201
BmiI GGNNCC 3 cut(s) 154, 171, 203
BmrFI CCNGG 1 cut(s) 415
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 314
BmtI GCTAGC 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 414
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 289
Bse1I ACTGG 4 cut(s) 44, 145, 218, 454
BseBI CCWGG 1 cut(s) 415
BseDI CCNNGG 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 179, 289
BseNI ACTGG 4 cut(s) 44, 145, 218, 454
BseXI GCAGC 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 169
BsiEI CGRYCG 1 cut(s) 438
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 2 cut(s) 138, 187
BslI CCNNNNNNNGG 2 cut(s) 179, 289
BsmFI GGGAC 2 cut(s) 138, 187
BsnI GGCC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 435
BspANI GGCC 1 cut(s) 282
BspLI GGNNCC 3 cut(s) 154, 171, 203
BspMI ACCTGC 1 cut(s) 170
BspOI GCTAGC 1 cut(s) 426
BspT107I GGYRCC 1 cut(s) 169
BsrI ACTGG 4 cut(s) 44, 145, 218, 454
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 73, 166
Bst6I CTCTTC 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 424, 428
BstENI CCTNNNNNAGG 1 cut(s) 177
BstH2I RGCGCY 2 cut(s) 468, 501
BstHHI GCGC 2 cut(s) 467, 500
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 415
BstNSI RCATGY 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 51, 171
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 2 cut(s) 424, 428
CfoI GCGC 2 cut(s) 467, 500
Cfr13I GGNCC 2 cut(s) 152, 201
Csp6I GTAC 5 cut(s) 17, 127, 170, 325, 447
CviAII CATG 2 cut(s) 136, 427
CviJI RGCY 8 cut(s) 5, 25, 196, 261, 282, 294, 410, 422
CviKI_1 RGCY 8 cut(s) 5, 25, 196, 261, 282, 294, 410, 422
CviQI GTAC 5 cut(s) 17, 127, 170, 325, 447
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
DraI TTTAAA 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 152, 201
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 413
FaeI CATG 2 cut(s) 139, 430
FaiI YATR 8 cut(s) 137, 265, 333, 350, 428, 482, 493, 495
FaqI GGGAC 2 cut(s) 138, 187
FatI CATG 2 cut(s) 135, 426
Fnu4HI GCNGC 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 3 cut(s) 284, 423, 468
GlaI GCGC 2 cut(s) 466, 499
GluI GCNGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 2 cut(s) 468, 501
HaeIII GGCC 1 cut(s) 282
HapII CCGG 1 cut(s) 189
HhaI GCGC 2 cut(s) 467, 500
Hin1II CATG 2 cut(s) 139, 430
Hin6I GCGC 2 cut(s) 465, 498
HinP1I GCGC 2 cut(s) 465, 498
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 73, 166
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 2 cut(s) 139, 430
HspAI GCGC 2 cut(s) 465, 498
KpnI GGTACC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 1 cut(s) 314
MaeI CTAG 3 cut(s) 284, 423, 468
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 2 cut(s) 263, 333
MluCI AATT 4 cut(s) 10, 113, 222, 474
MnlI CCTC 4 cut(s) 42, 349, 437, 511
MseI TTAA 2 cut(s) 8, 459
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 415
MvaI CCWGG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 1 cut(s) 435
NheI GCTAGC 1 cut(s) 422
NlaIII CATG 2 cut(s) 139, 430
NlaIV GGNNCC 3 cut(s) 154, 171, 203
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 430
PaeI GCATGC 1 cut(s) 430
PkrI GCNGC 1 cut(s) 377
Ple19I CGATCG 1 cut(s) 438
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 3 cut(s) 154, 171, 203
PspPI GGNCC 2 cut(s) 152, 201
PvuI CGATCG 1 cut(s) 438
RsaI GTAC 5 cut(s) 18, 128, 171, 326, 448
RsaNI GTAC 5 cut(s) 17, 127, 170, 325, 447
SaqAI TTAA 2 cut(s) 8, 459
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 2 cut(s) 152, 201
ScaI AGTACT 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 415
SetI ASST 9 cut(s) 27, 88, 175, 184, 198, 383, 424, 448, 458
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 2 cut(s) 152, 201
SphI GCATGC 1 cut(s) 430
Sse9I AATT 4 cut(s) 10, 113, 222, 474
SspMI CTAG 3 cut(s) 284, 423, 468
StyD4I CCNGG 1 cut(s) 413
TaaI ACNGT 2 cut(s) 73, 166
TaiI ACGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 434
TasI AATT 4 cut(s) 10, 113, 222, 474
TatI WGTACW 2 cut(s) 126, 324
Tru1I TTAA 2 cut(s) 8, 459
Tru9I TTAA 2 cut(s) 8, 459
TscAI CASTG 2 cut(s) 51, 171
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 137
TspGWI ACGGA 2 cut(s) 55, 333
TspRI CASTG 2 cut(s) 51, 171
VpaK11BI GGWCC 2 cut(s) 152, 201
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 2 cut(s) 10, 113
XceI RCATGY 1 cut(s) 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 3 cut(s) 284, 423, 468
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.