RLG00000001443

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008878
Physical Location & Seq
Forward (+)
15671669 .. 15674344
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001443

Sequence Viewer

Length: 600 bp
ATGAAAATCACAGGCATTGCTGTAGGGAACGAGATTGATGCCACGAATTCGCTGCCTAGCCTTGTTCTGGCCATGTCCAGCATTCAAGGGGCACTTTCTCAGCTAGGCCTTGACTCACACATCATGGTGTCATCGCCTTTTTCTTATTCGGTGATGAAAGAGTCTTATCTGCCTTCTGCTGGCAATTTCAAAAGCAAGGTCTCCAATGTAATGTCACAATTGTTACAGTTTCTGGCAAGCACAAAGGCACCATTTGGATCAAATAAAAAAGAAAATGAAGGTGTAAACCCAGACCGTTGCAAAATGTTTGAGCTTACCCATGTCCACGATAATGAAAAACCTAATGAACCGAATTCTAAAGCTATTGCCTTGATGAAGGACAAGATTGACAAGATGAAGACTATAAAGAGGGCATCCCAACTTCTTCTTAATGATTTTGAAATCAATGAAGTATATGCGTCTGTGCTTGGAAAAGAGACACGTGGAGGGGTGCGAGGATTTGGCATTGGAGCCATACCTGAACAAGTTCCTGGTGTACTAGTGCAAAAGAGATGTGTTCATTTAAAGGTACAAGCAATGAGAGAACAACATGAGGCTTGA

Protein Analysis

200

Amino Acids

21.74

Weight (kDa)

9.02

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 3 - 87 3.6e-10 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 46, 352
AcvI CACGTG 1 cut(s) 482
AfaI GTAC 2 cut(s) 537, 570
AfiI CCNNNNNNNGG 2 cut(s) 67, 179
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 3 cut(s) 86, 190, 440
AhlI ACTAGT 1 cut(s) 538
AjnI CCWGG 1 cut(s) 529
AluBI AGCT 3 cut(s) 103, 313, 362
AluI AGCT 3 cut(s) 103, 313, 362
Alw26I GTCTC 2 cut(s) 205, 470
AlwI GGATC 1 cut(s) 265
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 2 cut(s) 69, 106
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 2 cut(s) 46, 352
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
Asp700I GAANNNNTTC 1 cut(s) 525
AsuHPI GGTGA 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 71
BanI GGYRCC 1 cut(s) 247
BbrPI CACGTG 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 39
BcgI CGANNNNNNTGC 4 cut(s) 20, 34, 54, 68
BciT130I CCWGG 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 205, 470
BcuI ACTAGT 1 cut(s) 538
BfaI CTAG 3 cut(s) 57, 104, 539
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 531
BmiI GGNNCC 2 cut(s) 249, 511
BmrFI CCNGG 1 cut(s) 531
BmsI GCATC 2 cut(s) 28, 422
BpiI GAAGAC 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 482
BsaI GGTCTC 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 179
Bse3DI GCAATG 2 cut(s) 15, 582
BseBI CCWGG 1 cut(s) 531
BseGI GGATG 1 cut(s) 413
BseLI CCNNNNNNNGG 2 cut(s) 67, 179
BseMI GCAATG 2 cut(s) 15, 582
BseMII CTCAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 1 cut(s) 39
BshFI GGCC 2 cut(s) 71, 108
BshNI GGYRCC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 67, 179
BsmAI GTCTC 2 cut(s) 205, 470
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 2 cut(s) 71, 108
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 1 cut(s) 257
BspANI GGCC 2 cut(s) 71, 108
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 249, 511
BspPI GGATC 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 2 cut(s) 15, 582
BssMI GATC 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 2 cut(s) 228, 296
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 181, 238
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 413
BstKTI GATC 1 cut(s) 260
BstMAI GTCTC 2 cut(s) 205, 470
BstMBI GATC 1 cut(s) 257
BstNI CCWGG 1 cut(s) 531
BstSCI CCNGG 1 cut(s) 529
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 404
BsuRI GGCC 2 cut(s) 71, 108
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 181, 238
CaiI CAGNNNCTG 1 cut(s) 232
CseI GACGC 1 cut(s) 447
Csp6I GTAC 2 cut(s) 536, 569
CviAII CATG 4 cut(s) 73, 124, 320, 590
CviJI RGCY 8 cut(s) 60, 71, 103, 108, 313, 362, 512, 596
CviKI_1 RGCY 8 cut(s) 60, 71, 103, 108, 313, 362, 512, 596
CviQI GTAC 2 cut(s) 536, 569
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
DraI TTTAAA 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 482
EcoRI GAATTC 2 cut(s) 46, 352
EcoRII CCWGG 1 cut(s) 529
FaeI CATG 4 cut(s) 76, 127, 323, 593
FaiI YATR 8 cut(s) 74, 125, 321, 404, 454, 456, 515, 591
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 4 cut(s) 72, 123, 319, 589
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 3 cut(s) 57, 104, 539
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 71, 108
HgaI GACGC 1 cut(s) 447
Hin1II CATG 4 cut(s) 76, 127, 323, 593
HinfI GANTC 2 cut(s) 113, 161
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 3 cut(s) 286, 325, 536
Hpy8I GTNNAC 3 cut(s) 286, 325, 536
HpyAV CCTTC 3 cut(s) 183, 272, 370
HpyCH4III ACNGT 2 cut(s) 228, 296
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 2 cut(s) 300, 544
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 4 cut(s) 76, 127, 323, 593
Kzo9I GATC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 509
LpnPI CCDG 8 cut(s) 53, 91, 165, 218, 303, 516, 531, 543
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 2 cut(s) 28, 422
MaeI CTAG 3 cut(s) 57, 104, 539
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 2 cut(s) 213, 222
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MboII GAAGA 2 cut(s) 409, 416
MfeI CAATTG 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 4 cut(s) 46, 184, 218, 352
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 2 cut(s) 107, 170
MnlI CCTC 4 cut(s) 402, 479, 488, 586
Mox20I TGGCCA 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 1 cut(s) 71
MseI TTAA 2 cut(s) 429, 563
MslI CAYNNNNRTG 2 cut(s) 125, 330
Msp20I TGGCCA 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 531
MunI CAATTG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 1 cut(s) 531
NdeII GATC 1 cut(s) 257
NlaIII CATG 4 cut(s) 76, 127, 323, 593
NlaIV GGNNCC 2 cut(s) 249, 511
NmuCI GTSAC 1 cut(s) 213
PceI AGGCCT 1 cut(s) 108
PctI GAATGC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 525
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 2 cut(s) 107, 169
PmaCI CACGTG 1 cut(s) 482
PmlI CACGTG 1 cut(s) 482
PpsI GAGTC 2 cut(s) 107, 169
Ppu21I YACGTR 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 529
PspCI CACGTG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 249, 511
PstNI CAGNNNCTG 1 cut(s) 232
RsaI GTAC 2 cut(s) 537, 570
RsaNI GTAC 2 cut(s) 536, 569
RseI CAYNNNNRTG 2 cut(s) 125, 330
SaqAI TTAA 2 cut(s) 429, 563
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 257
SchI GAGTC 2 cut(s) 107, 170
ScrFI CCNGG 1 cut(s) 531
SduI GDGCHC 1 cut(s) 94
SetI ASST 9 cut(s) 105, 201, 283, 315, 343, 364, 484, 520, 570
SfaNI GCATC 2 cut(s) 28, 422
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 2 cut(s) 125, 330
SpeI ACTAGT 1 cut(s) 538
Sse9I AATT 4 cut(s) 46, 184, 218, 352
SseBI AGGCCT 1 cut(s) 108
SspMI CTAG 3 cut(s) 57, 104, 539
StuI AGGCCT 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 529
TaaI ACNGT 2 cut(s) 228, 296
TaiI ACGT 1 cut(s) 484
TasI AATT 4 cut(s) 46, 184, 218, 352
TatI WGTACW 1 cut(s) 535
Tru1I TTAA 2 cut(s) 429, 563
Tru9I TTAA 2 cut(s) 429, 563
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 9 cut(s) 17, 170, 291, 348, 360, 389, 410, 462, 548
XapI RAATTY 2 cut(s) 46, 352
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 3 cut(s) 57, 104, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.