Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008878

Physical Location & Seq

Genomic Coordinates Forward (+)

6947092 .. 6949678

Gene Structure 2587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22564

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAAAACGAAAATGGAGGTGTAAACCCAGACCATTGCAAAATGTTTGAGCTTACCCACGTCCACGATAATGAAAAACCTGATGAACCGAATTCTAAAGCTATTGCCTTGATGAAGGACAAGATTGACAAGATGAAGACTACAAAGAGGGCATCCCAACTTCCAGAGGTTCTTAATGATTTTGAAATCAATGAAGTATATGCGTCTGTGCTTGGAAAAGAGACACGTGGAGGGGTGCGAGGATTTGGCATTGGAGCCATACCTGAACAAGTTCCTAGTGTACTAGTGCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

10.86

Weight (kDa)

6.28

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	1 - 85	6.5e-07	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008878)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43350
rosa_chinensis	RchiOBHm_Chr2g0159671 RchiOBHm_Chr6g0251691
rosa_laevigata	RLG00000001443 RLG00000021172
rosa_multiflora	Rmu_sc0011502.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033700 Rroxscaffold_1G00036140 Rroxscaffold_2G00090330
rosa_rugosa	Rorug02G0477700 Rorug05G0220600 Rorug05G0220700 Rorug06G0035000
rosa_samantha	Rh2AG544600 Rh2BG557400 Rh2CG527700 Rh2DG566500 Rh3BG266300 Rh6AG013600 Rh6AG092700 Rh6CG080300 Rh6DG075700
rosa_wichuraiana	Rw2G045040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	91
AcvI	CACGTG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	185
AhlI	ACTAGT	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	2 cut(s)	52, 101
AluI	AGCT	2 cut(s)	52, 101
Alw26I	GTCTC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	270
BbrPI	CACGTG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	215
BcuI	ACTAGT	1 cut(s)	283
BfaI	CTAG	2 cut(s)	276, 284
BmgBI	CACGTC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	152
BseMI	GCAATG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	152
BstMAI	GTCTC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	152
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	281
CviJI	RGCY	3 cut(s)	52, 101, 257
CviKI_1	RGCY	3 cut(s)	52, 101, 257
CviQI	GTAC	1 cut(s)	281
Eco72I	CACGTG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	91
FaiI	YATR	3 cut(s)	199, 201, 260
FokI	GGATG	1 cut(s)	139
FspBI	CTAG	2 cut(s)	276, 284
HgaI	GACGC	1 cut(s)	192
Hpy166II	GTNNAC	3 cut(s)	25, 64, 281
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	3 cut(s)	25, 64, 281
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	60, 226
HpyCH4V	TGCA	2 cut(s)	39, 289
HpySE526I	ACGT	2 cut(s)	60, 226
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	4 cut(s)	42, 93, 177, 276
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	2 cut(s)	276, 284
MaeII	ACGT	2 cut(s)	60, 226
MboII	GAAGA	1 cut(s)	148
MluCI	AATT	1 cut(s)	91
MnlI	CCTC	5 cut(s)	11, 141, 160, 224, 233
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	69
NlaIV	GGNNCC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	270
PmaCI	CACGTG	1 cut(s)	227
PmlI	CACGTG	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	174
SetI	ASST	8 cut(s)	22, 54, 63, 82, 103, 171, 229, 265
SfaNI	GCATC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	69
SpeI	ACTAGT	1 cut(s)	283
Sse9I	AATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	276, 284
TaiI	ACGT	2 cut(s)	63, 229
TasI	AATT	1 cut(s)	91
TatI	WGTACW	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	6 cut(s)	17, 87, 99, 128, 149, 207
XapI	RAATTY	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	2 cut(s)	276, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.