Rh3BG266300

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0008878
Physical Location & Seq
Forward (+)
25809780 .. 25812009
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG266300.1

Sequence Viewer

Length: 489 bp
ATGAATGAACTGTGGGAATTGGGGTCATACCCACTGCTCTTCAACATGTTGGTGCCCATATCTCTCACGTACATGTATGAAGTGTGGCTGGAGAGAGTTGCATCGGTCGATCATTCTGAAGACGATGACAGCGAGGAAGAGGATGAGAAAAAAGAAAATGGAGGTGTAAACCCAAACCGTTGCAAAATGTTTGAGCTTACCCATGTCCACGATAATGAAAAACCTGATGAACCGAATTCTAAAGCTATTGCCTTGATGAAGGACAAGATTGACAAGATGAAGACTACAAAGAGGGCATCCCAACTTCCAGAGGTTCTTAATGATTTTGAAATAAATGAAGTATATGCGTCCGTGCTTGGAGAAGAGACACGTGGAGGGGTGCGAGGATTTGGCATTGGAGCCATACCTGAACAAGTTCCTGGTGTACTAGTGCAGAAGAGATGTGTTCATTTAGAGGTACAAGCAATGAGAGAACAACATGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

162

Amino Acids

18.47

Weight (kDa)

4.74

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 47 - 133 4.8e-07 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 138
AcvI CACGTG 1 cut(s) 371
AfaI GTAC 3 cut(s) 71, 426, 459
AflIII ACRYGT 3 cut(s) 45, 72, 368
AgsI TTSAA 2 cut(s) 43, 329
AhlI ACTAGT 1 cut(s) 427
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 2 cut(s) 196, 245
AluI AGCT 2 cut(s) 196, 245
Alw26I GTCTC 1 cut(s) 359
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 126, 287
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 359
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 1 cut(s) 428
Bme1390I CCNGG 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 54, 400
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 2 cut(s) 110, 305
BpiI GAAGAC 2 cut(s) 126, 287
BpmI CTGGAG 1 cut(s) 110
BsaAI YACGTR 2 cut(s) 69, 371
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 420
BseGI GGATG 2 cut(s) 148, 296
BseMI GCAATG 1 cut(s) 471
BseSI GKGCMC 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 54, 400
BspQI GCTCTTC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 471
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 12, 179
Bst6I CTCTTC 4 cut(s) 44, 132, 357, 431
BstBAI YACGTR 2 cut(s) 69, 371
BstF5I GGATG 2 cut(s) 148, 296
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 109
BstMCI CGRYCG 1 cut(s) 108
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 2 cut(s) 49, 76
BstSCI CCNGG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 57
BstV2I GAAGAC 2 cut(s) 126, 287
BtsCI GGATG 2 cut(s) 148, 296
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
CseI GACGC 1 cut(s) 336
Csp6I GTAC 3 cut(s) 70, 425, 458
CviAII CATG 4 cut(s) 46, 73, 203, 479
CviJI RGCY 5 cut(s) 88, 196, 245, 401, 485
CviKI_1 RGCY 5 cut(s) 88, 196, 245, 401, 485
CviQI GTAC 3 cut(s) 70, 425, 458
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 4 cut(s) 44, 132, 357, 431
EarI CTCTTC 4 cut(s) 44, 132, 357, 431
Eco57I CTGAAG 1 cut(s) 138
Eco72I CACGTG 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 418
FaeI CATG 4 cut(s) 49, 76, 206, 482
FatI CATG 4 cut(s) 45, 72, 202, 478
FokI GGATG 2 cut(s) 155, 283
FspBI CTAG 1 cut(s) 428
GsuI CTGGAG 1 cut(s) 110
HgaI GACGC 1 cut(s) 336
Hin1II CATG 4 cut(s) 49, 76, 206, 482
Hpy166II GTNNAC 3 cut(s) 169, 208, 425
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 3 cut(s) 169, 208, 425
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 12, 179
HpyCH4IV ACGT 2 cut(s) 68, 370
HpyCH4V TGCA 3 cut(s) 101, 183, 433
HpySE526I ACGT 2 cut(s) 68, 370
Hsp92II CATG 4 cut(s) 49, 76, 206, 482
Kzo9I GATC 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 398
LpnPI CCDG 6 cut(s) 74, 237, 321, 405, 420, 432
LweI GCATC 2 cut(s) 110, 305
MaeI CTAG 1 cut(s) 428
MaeII ACGT 2 cut(s) 68, 370
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 6 cut(s) 31, 131, 149, 292, 374, 448
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 17, 235
MnlI CCTC 9 cut(s) 127, 133, 155, 285, 304, 368, 377, 448, 475
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 3 cut(s) 50, 71, 213
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
NdeII GATC 1 cut(s) 109
NlaIII CATG 4 cut(s) 49, 76, 206, 482
NlaIV GGNNCC 2 cut(s) 54, 400
NspI RCATGY 2 cut(s) 49, 76
PciI ACATGT 2 cut(s) 45, 72
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 414
PmaCI CACGTG 1 cut(s) 371
PmlI CACGTG 1 cut(s) 371
Ppu21I YACGTR 2 cut(s) 69, 371
PscI ACATGT 2 cut(s) 45, 72
Psp6I CCWGG 1 cut(s) 418
PspCI CACGTG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 2 cut(s) 54, 400
RsaI GTAC 3 cut(s) 71, 426, 459
RsaNI GTAC 3 cut(s) 70, 425, 458
RseI CAYNNNNRTG 3 cut(s) 50, 71, 213
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 318
Sau3AI GATC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 57
SetI ASST 9 cut(s) 71, 166, 198, 226, 247, 315, 373, 409, 459
SfaNI GCATC 2 cut(s) 110, 305
SmiMI CAYNNNNRTG 3 cut(s) 50, 71, 213
SpeI ACTAGT 1 cut(s) 427
Sse9I AATT 2 cut(s) 17, 235
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 12, 179
TaiI ACGT 2 cut(s) 71, 373
TaqI TCGA 1 cut(s) 108
TaqII GACCGA 1 cut(s) 94
TasI AATT 2 cut(s) 17, 235
TatI WGTACW 1 cut(s) 424
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 9 cut(s) 17, 21, 93, 231, 243, 272, 293, 351, 437
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 1 cut(s) 39
XapI RAATTY 1 cut(s) 235
XceI RCATGY 2 cut(s) 49, 76
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.