Rh2DG566500

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008878
Physical Location & Seq
Forward (+)
79588735 .. 79589277
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG566500.1

Sequence Viewer

Length: 543 bp
ATGGCTTTAAATTTTATACCAAAGATGACCCCTCATCTTTCTCCAGTGTTTCTGCTCGTTCTATCCGTGACTGTATTTTTAGCACCTGTTGAGCAATCTGGGTCTGAAAAAGAATTTGAGATGAAGTACTGCATCATGGAAATCCAGTCTGGTCCCAATGCCACAGTGGCACCTGGTACAGGTATTGCCGGAAAGTTTTGGTCCCCGACCAACTGGGGAACAATTCTCGTCTGTTATAGCCCGTTTTTTGAAGACCCAAGCCCATACTCAAGAAAAGTTGGCCGAGTCCGTGGCTTGGTAGTGGCATCATCAAAAGACGGAGAGTACAACTATATTTCCTCTTCTACTATGTTCACAAGAAGGGAGTACAATGGCAGCACCTTACGGGCACAAGGAACATTCAACAGGGCTTCCAGGGGAGCTAGCGTGCTTTCGATCGTAGGAGGTACCGGAACGTTTAAGGGCGCTAGGGGAATTGCTATGCTTCAAACATATAGCACCTCATTTTTACTATTCATCATCAAGTTTTCTCTTCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

180

Amino Acids

19.66

Weight (kDa)

9.69

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 46 - 167 1.6e-23 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 446
AccB1I GGYRCC 2 cut(s) 169, 446
AclI AACGTT 1 cut(s) 455
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 10, 113
AfaI GTAC 5 cut(s) 128, 178, 326, 368, 448
AfiI CCNNNNNNNGG 2 cut(s) 179, 295
AgsI TTSAA 3 cut(s) 251, 403, 488
AjnI CCWGG 2 cut(s) 172, 413
AluBI AGCT 1 cut(s) 422
AluI AGCT 1 cut(s) 422
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 375
ApoI RAATTY 2 cut(s) 10, 113
Asp718I GGTACC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 152, 201
AsuNHI GCTAGC 1 cut(s) 422
AvaII GGWCC 2 cut(s) 152, 201
BaeGI GKGCMC 1 cut(s) 391
BanI GGYRCC 2 cut(s) 169, 446
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 387
BciT130I CCWGG 2 cut(s) 174, 415
BfaI CTAG 2 cut(s) 423, 468
BfoI RGCGCY 1 cut(s) 468
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 174, 415
Bme18I GGWCC 2 cut(s) 152, 201
BmgT120I GGNCC 2 cut(s) 152, 201
BmiI GGNNCC 4 cut(s) 154, 171, 203, 448
BmrFI CCNGG 2 cut(s) 174, 415
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 141, 314
BmtI GCTAGC 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 289, 414
BsaWI WCCGGW 1 cut(s) 449
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 295
Bse1I ACTGG 3 cut(s) 44, 145, 218
BseBI CCWGG 2 cut(s) 174, 415
BseDI CCNNGG 2 cut(s) 289, 414
BseLI CCNNNNNNNGG 2 cut(s) 179, 295
BseNI ACTGG 3 cut(s) 44, 145, 218
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 2 cut(s) 169, 446
BsiEI CGRYCG 1 cut(s) 438
BsiSI CCGG 2 cut(s) 189, 450
BslFI GGGAC 2 cut(s) 138, 187
BslI CCNNNNNNNGG 2 cut(s) 179, 295
BsmFI GGGAC 2 cut(s) 138, 187
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 1 cut(s) 435
BspANI GGCC 1 cut(s) 282
BspLI GGNNCC 4 cut(s) 154, 171, 203, 448
BspOI GCTAGC 1 cut(s) 426
BspT107I GGYRCC 2 cut(s) 169, 446
BsrI ACTGG 3 cut(s) 44, 145, 218
BssECI CCNNGG 2 cut(s) 289, 414
BssMI GATC 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 174, 415
Bst4CI ACNGT 2 cut(s) 73, 166
Bst6I CTCTTC 2 cut(s) 346, 537
BstC8I GCNNGC 2 cut(s) 424, 428
BstDSI CCRYGG 1 cut(s) 289
BstENI CCTNNNNNAGG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 2 cut(s) 174, 415
BstSCI CCNGG 2 cut(s) 172, 413
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 51, 171
Cac8I GCNNGC 2 cut(s) 424, 428
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 152, 201
CsiI ACCWGGT 1 cut(s) 172
Csp6I GTAC 5 cut(s) 127, 177, 325, 367, 447
CviAII CATG 1 cut(s) 136
CviJI RGCY 7 cut(s) 5, 240, 261, 282, 294, 410, 422
CviKI_1 RGCY 7 cut(s) 5, 240, 261, 282, 294, 410, 422
CviQI GTAC 5 cut(s) 127, 177, 325, 367, 447
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
DraI TTTAAA 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 2 cut(s) 346, 537
EarI CTCTTC 2 cut(s) 346, 537
Eco47I GGWCC 2 cut(s) 152, 201
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 172, 413
FaeI CATG 1 cut(s) 139
FaiI YATR 9 cut(s) 17, 137, 237, 265, 333, 350, 482, 493, 495
FaqI GGGAC 2 cut(s) 138, 187
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 2 cut(s) 423, 468
GlaI GCGC 1 cut(s) 466
GluI GCNGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 1 cut(s) 282
HapII CCGG 2 cut(s) 189, 450
HhaI GCGC 1 cut(s) 467
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 1 cut(s) 285
HpaII CCGG 2 cut(s) 189, 450
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 73, 166
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 465
KpnI GGTACC 1 cut(s) 450
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 2 cut(s) 141, 314
MabI ACCWGGT 1 cut(s) 172
MaeI CTAG 2 cut(s) 423, 468
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 3 cut(s) 263, 333, 524
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 4 cut(s) 10, 113, 222, 474
MlyI GAGTC 1 cut(s) 294
MnlI CCTC 4 cut(s) 42, 349, 437, 511
MseI TTAA 2 cut(s) 8, 459
MspI CCGG 2 cut(s) 189, 450
MspR9I CCNGG 2 cut(s) 174, 415
MvaI CCWGG 2 cut(s) 174, 415
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 435
NheI GCTAGC 1 cut(s) 422
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 4 cut(s) 154, 171, 203, 448
NmeAIII GCCGAG 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PkrI GCNGC 1 cut(s) 377
Ple19I CGATCG 1 cut(s) 438
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 172, 413
PspGI CCWGG 2 cut(s) 172, 413
PspN4I GGNNCC 4 cut(s) 154, 171, 203, 448
PspPI GGNCC 2 cut(s) 152, 201
PvuI CGATCG 1 cut(s) 438
RsaI GTAC 5 cut(s) 128, 178, 326, 368, 448
RsaNI GTAC 5 cut(s) 127, 177, 325, 367, 447
SaqAI TTAA 2 cut(s) 8, 459
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 2 cut(s) 152, 201
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 2 cut(s) 174, 415
SduI GDGCHC 1 cut(s) 391
SetI ASST 8 cut(s) 88, 175, 184, 383, 424, 448, 458, 503
SexAI ACCWGGT 1 cut(s) 172
SfaNI GCATC 2 cut(s) 141, 314
SinI GGWCC 2 cut(s) 152, 201
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 4 cut(s) 10, 113, 222, 474
SspMI CTAG 2 cut(s) 423, 468
StyD4I CCNGG 2 cut(s) 172, 413
TaaI ACNGT 2 cut(s) 73, 166
TaiI ACGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 434
TasI AATT 4 cut(s) 10, 113, 222, 474
TatI WGTACW 3 cut(s) 126, 324, 366
Tru1I TTAA 2 cut(s) 8, 459
Tru9I TTAA 2 cut(s) 8, 459
TscAI CASTG 2 cut(s) 51, 171
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 137, 505
TspGWI ACGGA 3 cut(s) 55, 278, 333
TspRI CASTG 2 cut(s) 51, 171
VpaK11BI GGWCC 2 cut(s) 152, 201
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 2 cut(s) 10, 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 2 cut(s) 423, 468
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.