RchiOBHm_Chr2g0171131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011612
Physical Location & Seq
Forward (+)
84811789 .. 84812088
300 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53857

Sequence Viewer

Length: 300 bp
ATGGCGACCTCATGCGACCGGGTTAAATTGAACTGCATCTCTTATTGGTTTAAGCCCAGTTGTAAGGTAGGGTTGTGTGCGATTGCTCGTGCTGCTGATCGTACCTTGGTCTTTGTTGAATTTGAGCTTGGGGTGGCTGCATCTGCACCAGACGCCGAAGCCAAGGCCTGTCTTATGGCCTTACGACTTGCTGCTGAAGGCCTTGGTGACCGTCCCTTTCTTCTGGAGTCCCACTTTTTTCGAACTCCCTTCTCCACGTTTGAAGATTTTGGGGAATCATTGGCATCGTCGGTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.74

Weight (kDa)

5.28

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 3 cut(s) 31, 119, 263
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AoxI GGCC 3 cut(s) 165, 177, 199
ApeKI GCWGC 3 cut(s) 92, 137, 191
ApoI RAATTY 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 241
BauI CACGAG 1 cut(s) 87
BbvI GCAGC 3 cut(s) 79, 124, 178
BcnI CCSGG 1 cut(s) 20
BisI GCNGC 3 cut(s) 93, 138, 192
BlsI GCNGC 3 cut(s) 94, 139, 193
Bme1390I CCNGG 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 3 cut(s) 45, 149, 293
BmuI ACTGGG 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 105, 162, 202
Bse1I ACTGG 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 105, 162, 202
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 79, 124, 178
BsgI GTGCAG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 3 cut(s) 167, 179, 201
BsiEI CGRYCG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 19
BslFI GGGAC 2 cut(s) 198, 214
BsmFI GGGAC 2 cut(s) 198, 214
BsnI GGCC 3 cut(s) 167, 179, 201
Bsp119I TTCGAA 1 cut(s) 241
Bsp143I GATC 1 cut(s) 97
BspANI GGCC 3 cut(s) 167, 179, 201
BspT104I TTCGAA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 105, 162, 202
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 3 cut(s) 105, 162, 202
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 241
BstEII GGTNACC 1 cut(s) 206
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 3 cut(s) 92, 143, 152
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 79, 124, 178
BsuRI GGCC 3 cut(s) 167, 179, 201
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 12
CviJI RGCY 7 cut(s) 55, 127, 137, 161, 167, 179, 201
CviKI_1 RGCY 7 cut(s) 55, 127, 137, 161, 167, 179, 201
CviQI GTAC 1 cut(s) 102
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco130I CCWWGG 3 cut(s) 105, 162, 202
Eco147I AGGCCT 2 cut(s) 167, 201
Eco57I CTGAAG 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 206
EcoT14I CCWWGG 3 cut(s) 105, 162, 202
ErhI CCWWGG 3 cut(s) 105, 162, 202
FaeI CATG 1 cut(s) 15
FaiI YATR 3 cut(s) 13, 176, 298
FaqI GGGAC 2 cut(s) 198, 214
FatI CATG 1 cut(s) 11
Fnu4HI GCNGC 3 cut(s) 93, 138, 192
Fsp4HI GCNGC 3 cut(s) 93, 138, 192
GluI GCNGC 3 cut(s) 93, 138, 192
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 3 cut(s) 167, 179, 201
HapII CCGG 1 cut(s) 19
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 15
HinfI GANTC 2 cut(s) 227, 275
HpaII CCGG 1 cut(s) 19
HphI GGTGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 191, 259
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 3 cut(s) 36, 140, 146
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 143, 152
HpySE526I ACGT 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 15
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 5 cut(s) 32, 70, 162, 181, 209
Lsp1109I GCAGC 3 cut(s) 79, 124, 178
LweI GCATC 3 cut(s) 45, 149, 293
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 212, 275
MluCI AATT 2 cut(s) 26, 119
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 1 cut(s) 19
MseI TTAA 2 cut(s) 24, 51
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 92, 143, 152
NciI CCSGG 1 cut(s) 20
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 206
NspV TTCGAA 1 cut(s) 241
PceI AGGCCT 2 cut(s) 167, 201
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 94, 139, 193
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspEI GGTNACC 1 cut(s) 206
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 24, 51
SatI GCNGC 3 cut(s) 93, 138, 192
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 20
SetI ASST 5 cut(s) 11, 69, 107, 129, 260
SfaNI GCATC 3 cut(s) 45, 149, 293
SfuI TTCGAA 1 cut(s) 241
Sse9I AATT 2 cut(s) 26, 119
SseBI AGGCCT 2 cut(s) 167, 201
StuI AGGCCT 2 cut(s) 167, 201
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 3 cut(s) 105, 162, 202
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 241
TasI AATT 2 cut(s) 26, 119
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 24, 51
Tru9I TTAA 2 cut(s) 24, 51
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 3 cut(s) 92, 137, 191
Tsp45I GTSAC 1 cut(s) 206
XapI RAATTY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.