Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003517.1

Orthogroup ID

OG0011612

Physical Location & Seq

Genomic Coordinates Reverse (-)

3599 .. 5443

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003517.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgaaggactttgtaaaatgtgttgatgaactgattactagtttaccttatgctcaccattatcatgtagattgcattgtccagtggctgaagagagatcacacctgtcccttgtgccgataccgaatgccacctggaagcatggacgaggacagggacgcagactgggatggggacgtagttgctcgatttggccgttatcattatgaacagttcgctttgtgtaaatacaggttttggatcccacatgccacagcgataaagatcaatgttatctcttactggagtaaggctaacaacaaagtggctgtagttgccgttgcccgttgttcccgttgtactcttgatgctgttgatgtcaatcttggcctcgcttcatctgccccagatgcggaggccagggcgtgcctgtttggtgtgagacttgcaaaggatcatcagatggagctgagaaatgtcgtctttgagacacatttcttcagcaatttcatggagggtcactatgctgatgatgctgctgttaggcggatcgtggataaactcgaacaacaagtacttggtagcaggattgcctgtctaaacataaaacataaactcaaacttgatagcaaagcttgtcgttcaaagcgagccgcacaatttccgaagcagttttattctgacgcctctcgcatttgctccactgcacattcagctgctaatactgagaaatcaacacagcaacagatggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

244

Amino Acids

27.88

Weight (kDa)

8.72

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171131 RchiOBHm_Chr2g0171241 RchiOBHm_Chr5g0041781
rosa_laevigata	RLG00000022005 RLG00000022007
rosa_multiflora	Rmu_sc0003517.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080920
rosa_samantha	Rh1AG148400 Rh1BG074400 Rh1CG139900 Rh1DG155200 Rh2AG625800 Rh2AG627600 Rh2AG639000 Rh2BG638200 Rh2CG605200 Rh2CG607000 Rh2DG653900 Rh2DG655400
rosa_wichuraiana	Rw2G051840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	392, 526, 633
AclWI	GGATC	4 cut(s)	235, 248, 441, 536
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	2 cut(s)	110, 463
AcyI	GRCGYC	1 cut(s)	663
AfaI	GTAC	2 cut(s)	340, 555
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	624
AhlI	ACTAGT	1 cut(s)	38
AjnI	CCWGG	2 cut(s)	133, 398
AluBI	AGCT	3 cut(s)	448, 614, 695
AluI	AGCT	3 cut(s)	448, 614, 695
Alw26I	GTCTC	2 cut(s)	415, 461
AlwI	GGATC	4 cut(s)	235, 248, 441, 536
AlwNI	CAGNNNCTG	1 cut(s)	88
AoxI	GGCC	3 cut(s)	193, 367, 396
ApeKI	GCWGC	2 cut(s)	515, 695
AsuHPI	GGTGA	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	502, 682
BccI	CCATC	3 cut(s)	164, 436, 721
BceAI	ACGGC	2 cut(s)	180, 302
BciT130I	CCWGG	2 cut(s)	135, 400
BcoDI	GTCTC	2 cut(s)	415, 461
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	3 cut(s)	516, 633, 696
BlsI	GCNGC	3 cut(s)	517, 634, 697
BmcAI	AGTACT	1 cut(s)	555
Bme1390I	CCNGG	2 cut(s)	135, 400
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	135, 400
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	3 cut(s)	337, 379, 502
BmuI	ACTGGG	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	304
BsaBI	GATNNNNATC	2 cut(s)	263, 360
BsaHI	GRCGYC	1 cut(s)	663
BsaJI	CCNNGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	3 cut(s)	82, 170, 287
Bse8I	GATNNNNATC	2 cut(s)	263, 360
BseBI	CCWGG	2 cut(s)	135, 400
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	2 cut(s)	263, 360
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMII	CTCAG	2 cut(s)	440, 696
BseNI	ACTGG	3 cut(s)	82, 170, 287
BseXI	GCAGC	2 cut(s)	502, 682
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	3 cut(s)	195, 369, 398
BslFI	GGGAC	3 cut(s)	93, 170, 188
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	2 cut(s)	415, 461
BsmFI	GGGAC	3 cut(s)	93, 170, 188
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	3 cut(s)	195, 369, 398
Bsp143I	GATC	5 cut(s)	97, 240, 264, 433, 528
BspACI	CCGC	3 cut(s)	392, 526, 633
BspANI	GGCC	3 cut(s)	195, 369, 398
BspCNI	CTCAG	2 cut(s)	441, 697
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	4 cut(s)	235, 248, 441, 536
BsrI	ACTGG	3 cut(s)	82, 170, 287
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	5 cut(s)	97, 240, 264, 433, 528
BssNI	GRCGYC	1 cut(s)	663
Bst2UI	CCWGG	2 cut(s)	135, 400
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	663
BstC8I	GCNNGC	2 cut(s)	406, 630
BstDEI	CTNAG	2 cut(s)	449, 705
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	5 cut(s)	100, 243, 267, 436, 531
BstMAI	GTCTC	2 cut(s)	415, 461
BstMBI	GATC	5 cut(s)	97, 240, 264, 433, 528
BstMWI	GCNNNNNNNGC	5 cut(s)	314, 380, 389, 512, 692
BstNI	CCWGG	2 cut(s)	135, 400
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	133, 398
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	502, 682
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	195, 369, 398
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	89, 681
Cac8I	GCNNGC	2 cut(s)	406, 630
CaiI	CAGNNNCTG	1 cut(s)	88
CseI	GACGC	2 cut(s)	167, 671
Csp6I	GTAC	2 cut(s)	339, 554
CviAII	CATG	4 cut(s)	65, 142, 248, 490
CviQI	GTAC	2 cut(s)	339, 554
DdeI	CTNAG	2 cut(s)	449, 705
DpnI	GATC	5 cut(s)	99, 242, 266, 435, 530
DpnII	GATC	5 cut(s)	97, 240, 264, 433, 528
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	110, 463
EcoRII	CCWGG	2 cut(s)	133, 398
FaeI	CATG	4 cut(s)	68, 145, 251, 493
FaiI	YATR	9 cut(s)	51, 66, 143, 207, 249, 491, 504, 584, 591
FaqI	GGGAC	3 cut(s)	93, 170, 188
FatI	CATG	4 cut(s)	64, 141, 247, 489
Fnu4HI	GCNGC	3 cut(s)	516, 633, 696
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	516, 633, 696
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	3 cut(s)	516, 633, 696
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	3 cut(s)	195, 369, 398
HgaI	GACGC	2 cut(s)	167, 671
Hin1I	GRCGYC	1 cut(s)	663
Hin1II	CATG	4 cut(s)	68, 145, 251, 493
HindIII	AAGCTT	1 cut(s)	612
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	441, 645, 661
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	75, 428, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	314, 380, 389, 512, 692
HpyF3I	CTNAG	2 cut(s)	449, 705
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	663
Hsp92II	CATG	4 cut(s)	68, 145, 251, 493
Kzo9I	GATC	5 cut(s)	97, 240, 264, 433, 528
LmnI	GCTCC	2 cut(s)	445, 683
Lsp1109I	GCAGC	2 cut(s)	502, 682
LweI	GCATC	3 cut(s)	337, 379, 502
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	5 cut(s)	99, 242, 266, 435, 530
MboI	GATC	5 cut(s)	97, 240, 264, 433, 528
MboII	GAAGA	2 cut(s)	103, 469
MflI	RGATCY	1 cut(s)	240
MluCI	AATT	2 cut(s)	484, 638
MnlI	CCTC	5 cut(s)	142, 380, 388, 487, 676
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	695
MspR9I	CCNGG	2 cut(s)	135, 400
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	2 cut(s)	135, 400
MwoI	GCNNNNNNNGC	5 cut(s)	314, 380, 389, 512, 692
NdeII	GATC	5 cut(s)	97, 240, 264, 433, 528
NlaIII	CATG	4 cut(s)	68, 145, 251, 493
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 625
PctI	GAATGC	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	517, 634, 697
Psp6I	CCWGG	2 cut(s)	133, 398
PspGI	CCWGG	2 cut(s)	133, 398
PspN4I	GGNNCC	1 cut(s)	242
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	240
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	2 cut(s)	340, 555
RsaNI	GTAC	2 cut(s)	339, 554
RseI	CAYNNNNRTG	1 cut(s)	63
SatI	GCNGC	3 cut(s)	516, 633, 696
Sau3AI	GATC	5 cut(s)	97, 240, 264, 433, 528
ScaI	AGTACT	1 cut(s)	555
ScrFI	CCNGG	2 cut(s)	135, 400
SetI	ASST	8 cut(s)	49, 107, 136, 180, 236, 450, 616, 697
SfaNI	GCATC	3 cut(s)	337, 379, 502
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	63
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	2 cut(s)	484, 638
SsiI	CCGC	3 cut(s)	392, 526, 633
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	133, 398
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	187, 543
TasI	AATT	2 cut(s)	484, 638
TatI	WGTACW	2 cut(s)	338, 553
TauI	GCSGC	1 cut(s)	635
TscAI	CASTG	2 cut(s)	89, 688
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	515, 695
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	5 cut(s)	17, 42, 222, 366, 478
TspRI	CASTG	2 cut(s)	89, 688
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.