Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011612

Physical Location & Seq

Genomic Coordinates Forward (+)

79905171 .. 79906757

Gene Structure 1587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGGTGGAGGAGACGCCGAGGCCGAGGTGCAGGCAAGCTTGATCGACCCTGTGATGCGATGATTATGGCGACCTCATGCGACCGGGTTAAATTGAACTGCATCTCTTATTGGTTTAAGCCCAGTTGTAAGGTAGGGTTGTGTGTGATTGCTCGTGCTGTTGATCGTACCTTGGTCTTTGCTGAATTTGAGCTTGGGGTGGCTACATCTGCACCAGACGCTGAAGCCAAGGCCTGTCTTATGGCCTTGCGACTTGCTGCTGAAGGCCTTGGTGGCCGTCCCTTTCTTCTGGAGTCCCACTTTTTTCGAACTCCCTTCTCCACGTTTGAAGATTTTGGGGAATCATTGGCATCTTCGGTTGCTGGTTTGATCTCCCAGTACCGACAGGAGAACATTGAATGGAGCAAATGTGAAATGTATGAGAATCAGATAAGATTTTGGGGAATCATTGGCATCGTCGATTGTATAGACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.68

Weight (kDa)

7.51

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171131 RchiOBHm_Chr2g0171241 RchiOBHm_Chr5g0041781
rosa_laevigata	RLG00000022005 RLG00000022007
rosa_multiflora	Rmu_sc0003517.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080920
rosa_samantha	Rh1AG148400 Rh1BG074400 Rh1CG139900 Rh1DG155200 Rh2AG625800 Rh2AG627600 Rh2AG639000 Rh2BG638200 Rh2CG605200 Rh2CG607000 Rh2DG653900 Rh2DG655400
rosa_wichuraiana	Rw2G051840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	243, 282
AcyI	GRCGYC	1 cut(s)	16
AfaI	GTAC	2 cut(s)	169, 380
AgsI	TTSAA	3 cut(s)	97, 329, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	2 cut(s)	40, 193
AluI	AGCT	2 cut(s)	40, 193
Alw26I	GTCTC	1 cut(s)	7
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	5 cut(s)	22, 231, 243, 265, 274
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	307
BauI	CACGAG	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	7
BglI	GCCNNNNNGGC	1 cut(s)	273
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	2 cut(s)	117, 370
BmsI	GCATC	4 cut(s)	46, 111, 359, 462
BmuI	ACTGGG	2 cut(s)	117, 370
BpmI	CTGGAG	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	16
BsaJI	CCNNGG	5 cut(s)	19, 25, 171, 228, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse1I	ACTGG	2 cut(s)	123, 376
BseDI	CCNNGG	5 cut(s)	19, 25, 171, 228, 268
BseNI	ACTGG	2 cut(s)	123, 376
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	244
BsgI	GTGCAG	2 cut(s)	51, 195
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	5 cut(s)	24, 233, 245, 267, 276
BsiEI	CGRYCG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	264, 280
BsmAI	GTCTC	1 cut(s)	7
BsmBI	CGTCTC	1 cut(s)	7
BsmFI	GGGAC	2 cut(s)	264, 280
BsnI	GGCC	5 cut(s)	24, 233, 245, 267, 276
Bsp119I	TTCGAA	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	43, 163, 369
BspANI	GGCC	5 cut(s)	24, 233, 245, 267, 276
BspT104I	TTCGAA	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	123, 376
BssECI	CCNNGG	5 cut(s)	19, 25, 171, 228, 268
BssMI	GATC	3 cut(s)	43, 163, 369
BssNI	GRCGYC	1 cut(s)	16
BssSI	CACGAG	1 cut(s)	153
BssT1I	CCWWGG	3 cut(s)	171, 228, 268
Bst2BI	CACGAG	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	16
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	34, 38
BstKTI	GATC	3 cut(s)	46, 166, 372
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	3 cut(s)	43, 163, 369
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 218, 273
BstSCI	CCNGG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	5 cut(s)	24, 233, 245, 267, 276
BtgZI	GCGATG	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	34, 38
CaiI	CAGNNNCTG	1 cut(s)	221
CseI	GACGC	2 cut(s)	24, 227
Csp6I	GTAC	2 cut(s)	168, 379
CviAII	CATG	1 cut(s)	78
CviQI	GTAC	2 cut(s)	168, 379
DpnI	GATC	3 cut(s)	45, 165, 371
DpnII	GATC	3 cut(s)	43, 163, 369
EaeI	YGGCCR	1 cut(s)	274
Eco130I	CCWWGG	3 cut(s)	171, 228, 268
Eco147I	AGGCCT	2 cut(s)	233, 267
Eco57I	CTGAAG	2 cut(s)	243, 282
EcoT14I	CCWWGG	3 cut(s)	171, 228, 268
ErhI	CCWWGG	3 cut(s)	171, 228, 268
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	1 cut(s)	81
FaiI	YATR	6 cut(s)	68, 79, 242, 420, 467, 475
FaqI	GGGAC	2 cut(s)	264, 280
FatI	CATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	5 cut(s)	24, 233, 245, 267, 276
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	2 cut(s)	24, 227
Hin1I	GRCGYC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	5 cut(s)	293, 341, 424, 444, 470
HpaII	CCGG	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	257, 325
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	3 cut(s)	32, 102, 212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 218, 273
HpySE526I	ACGT	1 cut(s)	323
Hsp92I	GRCGYC	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	43, 163, 369
LmnI	GCTCC	1 cut(s)	402
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	4 cut(s)	46, 111, 359, 462
MaeII	ACGT	1 cut(s)	323
MalI	GATC	3 cut(s)	45, 165, 371
MboI	GATC	3 cut(s)	43, 163, 369
MboII	GAAGA	3 cut(s)	278, 341, 345
MluCI	AATT	2 cut(s)	92, 185
MlyI	GAGTC	2 cut(s)	302, 464
MnlI	CCTC	4 cut(s)	3, 14, 20, 85
MseI	TTAA	2 cut(s)	90, 117
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	209, 218, 273
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	3 cut(s)	43, 163, 369
NlaIII	CATG	1 cut(s)	81
NmeAIII	GCCGAG	2 cut(s)	44, 50
NspV	TTCGAA	1 cut(s)	307
PceI	AGGCCT	2 cut(s)	233, 267
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	341, 424, 444
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	301, 464
PpsI	GAGTC	2 cut(s)	301, 464
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	169, 380
RsaNI	GTAC	2 cut(s)	168, 379
SaqAI	TTAA	2 cut(s)	90, 117
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	43, 163, 369
SchI	GAGTC	2 cut(s)	302, 464
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	7 cut(s)	31, 42, 77, 135, 173, 195, 326
SfaNI	GCATC	4 cut(s)	46, 111, 359, 462
SfiI	GGCCNNNNNGGCC	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	307
Sse9I	AATT	2 cut(s)	92, 185
SseBI	AGGCCT	2 cut(s)	233, 267
StuI	AGGCCT	2 cut(s)	233, 267
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	3 cut(s)	171, 228, 268
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	3 cut(s)	46, 307, 459
TasI	AATT	2 cut(s)	92, 185
TfiI	GAWTC	3 cut(s)	341, 424, 444
Tru1I	TTAA	2 cut(s)	90, 117
Tru9I	TTAA	2 cut(s)	90, 117
TseI	GCWGC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.