Rh2BG638200

Ribosomal_S15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011612
Physical Location & Seq
Forward (+)
85861457 .. 85865962
4506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG638200.1

Sequence Viewer

Length: 597 bp
ATGCATCTTCGGCAGACTGGTTGGGATTCTTACTGCCTTATTCTCTCCAAACTTGGCCTTCGGGACACACCAGATTACAAGCAAGATTTAGAGTTAGGTGCTGAAATTTTCGCTGGAGGTGCAGTATCACTGGTTGTCAACGATAGATTCTGGAGTCCTCATGCATTCCAGGTTAAGTTGAATTGCAGCTCCTTTTGGGTCAAGTCAAGTTGTAAGGTTGGATTATGTGTCATTGCACGCGATGCTGATCGTTCTCTGGTCTTTTCTGAATGTGAGCTTGGGGTGGCCATATCGGCACCTGATGCAGAAGCAAAAGCGTGCCTCATGGCTTTACGACTTGCCACAGAACAACTTGCAGGCCGACCATTTGTGCTTGAGTCTCATTTTTTCCGAATGCCCTTCACGACGTTCGAAGATTTTGGCGCATCCTTAGCACCGTCGGTGGCTGGGTTAATCACCCGGTACCACCAGGAGAATATTCAATGGAGTAAGTGCGAAAGGTTTGAGAATCGAACTGCTTCAAGGATTGCCCTGCTTGCCTGTGAGGAGAAATTGGATGAAAATTGGAGAAATAGGCTTACTGTTGTCTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S15

Protein Analysis

198

Amino Acids

22.35

Weight (kDa)

5.86

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 2 cut(s) 295, 462
AccII CGCG 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 105
AfaI GTAC 1 cut(s) 464
AgsI TTSAA 3 cut(s) 181, 482, 522
AjnI CCWGG 2 cut(s) 168, 468
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 2 cut(s) 189, 277
AluI AGCT 2 cut(s) 189, 277
Alw26I GTCTC 1 cut(s) 384
AoxI GGCC 3 cut(s) 55, 285, 358
ApeKI GCWGC 1 cut(s) 186
ApoI RAATTY 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 517
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 425
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 448
AsuII TTCGAA 1 cut(s) 411
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 2 cut(s) 295, 462
BbvI GCAGC 1 cut(s) 198
BciT130I CCWGG 2 cut(s) 170, 470
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 170, 460, 470
BmiI GGNNCC 2 cut(s) 297, 464
BmrFI CCNGG 3 cut(s) 170, 460, 470
BmsI GCATC 4 cut(s) 13, 232, 292, 434
BpmI CTGGAG 2 cut(s) 135, 172
Bpu10I CCTNAGC 1 cut(s) 430
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 460
BsaBI GATNNNNATC 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bse1I ACTGG 2 cut(s) 22, 135
Bse3DI GCAATG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 2 cut(s) 170, 470
BseGI GGATG 2 cut(s) 425, 562
BseJI GATNNNNATC 1 cut(s) 246
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 22, 135
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 3 cut(s) 57, 287, 360
BshNI GGYRCC 2 cut(s) 295, 462
BsiSI CCGG 1 cut(s) 460
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 2 cut(s) 164, 399
BsnI GGCC 3 cut(s) 57, 287, 360
Bsp119I TTCGAA 1 cut(s) 411
Bsp143I GATC 1 cut(s) 247
BspANI GGCC 3 cut(s) 57, 287, 360
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 297, 464
BspT104I TTCGAA 1 cut(s) 411
BspT107I GGYRCC 2 cut(s) 295, 462
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 2 cut(s) 22, 135
BssMI GATC 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 170, 470
Bst4CI ACNGT 2 cut(s) 438, 583
BstAPI GCANNNNNTGC 2 cut(s) 242, 302
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 4 cut(s) 238, 319, 358, 537
BstDEI CTNAG 1 cut(s) 430
BstF5I GGATG 2 cut(s) 425, 562
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 7 cut(s) 10, 119, 242, 293, 302, 431, 536
BstNI CCWGG 2 cut(s) 170, 470
BstSCI CCNGG 3 cut(s) 168, 458, 468
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 198
BsuRI GGCC 3 cut(s) 57, 287, 360
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 425, 562
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 4 cut(s) 238, 319, 358, 537
CfoI GCGC 1 cut(s) 425
Csp6I GTAC 1 cut(s) 463
CviAII CATG 2 cut(s) 161, 325
CviJI RGCY 8 cut(s) 57, 189, 277, 287, 329, 360, 446, 577
CviKI_1 RGCY 8 cut(s) 57, 189, 277, 287, 329, 360, 446, 577
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 1 cut(s) 430
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 168, 468
EcoT22I ATGCAT 2 cut(s) 6, 166
FaeI CATG 2 cut(s) 164, 328
FaiI YATR 5 cut(s) 162, 226, 290, 326, 591
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 160, 324
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 2 cut(s) 412, 569
Fsp4HI GCNGC 1 cut(s) 187
GlaI GCGC 1 cut(s) 424
GluI GCNGC 1 cut(s) 187
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 2 cut(s) 135, 172
HaeIII GGCC 3 cut(s) 57, 287, 360
HapII CCGG 1 cut(s) 460
HhaI GCGC 1 cut(s) 425
Hin1II CATG 2 cut(s) 164, 328
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 5 cut(s) 26, 147, 154, 377, 508
HpaII CCGG 1 cut(s) 460
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 268, 392
Hpy188III TCNNGA 3 cut(s) 62, 151, 403
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 2 cut(s) 409, 442
HpyAV CCTTC 2 cut(s) 68, 409
HpyCH4III ACNGT 2 cut(s) 438, 583
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 7 cut(s) 4, 122, 164, 186, 236, 305, 356
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 119, 242, 293, 302, 431, 536
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 2 cut(s) 164, 328
HspAI GCGC 1 cut(s) 423
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 4 cut(s) 13, 232, 292, 434
MaeII ACGT 1 cut(s) 407
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 425
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 4 cut(s) 105, 181, 551, 562
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 2 cut(s) 163, 386
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 4 cut(s) 110, 168, 332, 538
Mox20I TGGCCA 1 cut(s) 287
Mph1103I ATGCAT 2 cut(s) 6, 166
MroXI GAANNNNTTC 1 cut(s) 517
MscI TGGCCA 1 cut(s) 287
MseI TTAA 2 cut(s) 174, 452
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 3 cut(s) 170, 460, 470
Mva1269I GAATGC 2 cut(s) 164, 399
MvaI CCWGG 2 cut(s) 170, 470
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 7 cut(s) 10, 119, 242, 293, 302, 431, 536
NciI CCSGG 1 cut(s) 460
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 164, 328
NlaIV GGNNCC 2 cut(s) 297, 464
NsiI ATGCAT 2 cut(s) 6, 166
NspV TTCGAA 1 cut(s) 411
PctI GAATGC 2 cut(s) 164, 399
PdmI GAANNNNTTC 1 cut(s) 517
PfeI GAWTC 3 cut(s) 26, 147, 508
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 2 cut(s) 162, 385
PpsI GAGTC 2 cut(s) 162, 385
Psp6I CCWGG 2 cut(s) 168, 468
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 168, 468
PspN4I GGNNCC 2 cut(s) 297, 464
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SaqAI TTAA 2 cut(s) 174, 452
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 247
SchI GAGTC 2 cut(s) 163, 386
ScrFI CCNGG 3 cut(s) 170, 460, 470
SetI ASST 9 cut(s) 100, 121, 174, 191, 219, 279, 301, 410, 503
SfaNI GCATC 4 cut(s) 13, 232, 292, 434
SfuI TTCGAA 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 4 cut(s) 105, 181, 551, 562
SspI AATATT 1 cut(s) 478
StyD4I CCNGG 3 cut(s) 168, 458, 468
TaaI ACNGT 2 cut(s) 438, 583
TaiI ACGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 411, 511
TasI AATT 4 cut(s) 105, 181, 551, 562
TfiI GAWTC 3 cut(s) 26, 147, 508
Tru1I TTAA 2 cut(s) 174, 452
Tru9I TTAA 2 cut(s) 174, 452
TscAI CASTG 1 cut(s) 135
TseI GCWGC 1 cut(s) 186
TspDTI ATGAA 1 cut(s) 573
TspRI CASTG 1 cut(s) 135
XapI RAATTY 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 517
Zsp2I ATGCAT 2 cut(s) 6, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.