Rh1CG139900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011612
Physical Location & Seq
Forward (+)
30480036 .. 30480577
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG139900.1

Sequence Viewer

Length: 387 bp
ATGGTTGAAGAGGTTATTAAGTATGATGCTGAAATTGTTGCTGGACCTATGGGGCAATTGGTTGTAAATGATAGGTTTTGGCAGATTCATGCAGTTCATATTAAAATGAACTATAGCTCATTCTGGTTCAAGCCTAGTTGCAAGGTGGCCATGTGTATTATAGCTCGCGCTCCTGATCGTGAGGTCCTTTTTACAGCGTGTGAGATCAGAGTGGCTATTTCTGCCTCTAAGGCAAAAGCTAAGGCCTGCCTCCTAGCCTTGCGCTTGGCTGCTGAACGCTTCCCTGACCCTTTTGTGATGGAGTCACATTTCTTTCATACTGGATTCTCAACATTTGAAGCTTTCATGGCATCACTTACACTATGTGTTGTTGCGTTCATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.38

Weight (kDa)

7.67

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 147
AdeI CACNNNGTG 1 cut(s) 365
AgsI TTSAA 3 cut(s) 8, 130, 338
AluBI AGCT 4 cut(s) 117, 164, 239, 341
AluI AGCT 4 cut(s) 117, 164, 239, 341
AoxI GGCC 2 cut(s) 147, 243
ApeKI GCWGC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 170, 264
AspS9I GGNCC 2 cut(s) 44, 184
AvaII GGWCC 2 cut(s) 44, 184
BalI TGGCCA 1 cut(s) 149
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 292
BfaI CTAG 2 cut(s) 135, 254
BfmI CTRYAG 1 cut(s) 112
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme18I GGWCC 2 cut(s) 44, 184
BmgT120I GGNCC 2 cut(s) 44, 184
BmsI GCATC 2 cut(s) 16, 359
Bpu10I CCTNAGC 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 149, 245
BsnI GGCC 2 cut(s) 149, 245
Bsp143I GATC 2 cut(s) 175, 204
BspANI GGCC 2 cut(s) 149, 245
BspFNI CGCG 1 cut(s) 168
BsrI ACTGG 1 cut(s) 325
BssMI GATC 2 cut(s) 175, 204
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 166, 247
BstDEI CTNAG 3 cut(s) 228, 240, 384
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 2 cut(s) 170, 264
BstKTI GATC 2 cut(s) 178, 207
BstMBI GATC 2 cut(s) 175, 204
BstMWI GCNNNNNNNGC 3 cut(s) 221, 230, 347
BstSFI CTRYAG 1 cut(s) 112
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 256
BsuRI GGCC 2 cut(s) 149, 245
Cac8I GCNNGC 2 cut(s) 166, 247
CfoI GCGC 2 cut(s) 170, 264
Cfr13I GGNCC 2 cut(s) 44, 184
CviAII CATG 3 cut(s) 89, 151, 346
DdeI CTNAG 3 cut(s) 228, 240, 384
DpnI GATC 2 cut(s) 177, 206
DpnII GATC 2 cut(s) 175, 204
DraIII CACNNNGTG 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 44, 184
EcoO109I RGGNCCY 1 cut(s) 184
FaeI CATG 3 cut(s) 92, 154, 349
FatI CATG 3 cut(s) 88, 150, 345
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 135, 254
GlaI GCGC 2 cut(s) 169, 263
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 2 cut(s) 149, 245
HhaI GCGC 2 cut(s) 170, 264
Hin1II CATG 3 cut(s) 92, 154, 349
Hin6I GCGC 2 cut(s) 168, 262
HinP1I GCGC 2 cut(s) 168, 262
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 3 cut(s) 85, 302, 324
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 2 cut(s) 173, 179
HpyCH4V TGCA 2 cut(s) 92, 141
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 230, 347
HpyF3I CTNAG 3 cut(s) 228, 240, 384
Hsp92II CATG 3 cut(s) 92, 154, 349
HspAI GCGC 2 cut(s) 168, 262
Kzo9I GATC 2 cut(s) 175, 204
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 6 cut(s) 27, 109, 186, 259, 297, 306
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 16, 359
MaeI CTAG 2 cut(s) 135, 254
MaeIII GTNAC 1 cut(s) 303
MalI GATC 2 cut(s) 177, 206
MboI GATC 2 cut(s) 175, 204
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 2 cut(s) 33, 56
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 4 cut(s) 4, 175, 235, 260
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
MseI TTAA 2 cut(s) 18, 102
Msp20I TGGCCA 1 cut(s) 149
MunI CAATTG 1 cut(s) 56
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 221, 230, 347
NdeII GATC 2 cut(s) 175, 204
NlaIII CATG 3 cut(s) 92, 154, 349
NmuCI GTSAC 1 cut(s) 303
PceI AGGCCT 1 cut(s) 245
PfeI GAWTC 2 cut(s) 85, 324
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
PspPI GGNCC 2 cut(s) 44, 184
PspPPI RGGWCCY 1 cut(s) 184
SaqAI TTAA 2 cut(s) 18, 102
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 175, 204
Sau96I GGNCC 2 cut(s) 44, 184
SchI GAGTC 1 cut(s) 311
SetI ASST 9 cut(s) 15, 49, 77, 119, 147, 166, 186, 241, 343
SfaNI GCATC 2 cut(s) 16, 359
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 2 cut(s) 44, 184
Sse9I AATT 2 cut(s) 33, 56
SseBI AGGCCT 1 cut(s) 245
SspMI CTAG 2 cut(s) 135, 254
StuI AGGCCT 1 cut(s) 245
TasI AATT 2 cut(s) 33, 56
TfiI GAWTC 2 cut(s) 85, 324
Tru1I TTAA 2 cut(s) 18, 102
Tru9I TTAA 2 cut(s) 18, 102
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 6 cut(s) 77, 86, 122, 305, 334, 367
VpaK11BI GGWCC 2 cut(s) 44, 184
XspI CTAG 2 cut(s) 135, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.