Rh2CG605200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011612
Physical Location & Seq
Reverse (-)
78087822 .. 78089600
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG605200.1

Sequence Viewer

Length: 354 bp
ATGGCTCAGGTGGCGGCCATCAATGATGATGGACTTATTCTCATCAATGACCCGTATTGGATCCCCCATCCCACAGCAATCAAGGTTAATATGTGCTCGTTCTGGTGCAAGGCGGAAAACAGAGTTGCAATGGCTGCTCTTGCTCGTGGGCCTGAGCGCGGGCTTGTAGCTATTGACTTCGAACATGGTTTGGCTTCGTCGGGCCCAGAGGCGGAGGCCAAGGCGTGCCTCTTTGGGATGCATCTTCTGTTAGGCGGCTTGCGGACATGGGTCTTAGGTGGGAGAAGGTCGATCGCTCCAAGAATCGTGCCGCAAGTCAACTTGCCCGACTTGCCTATCACGGGATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.6

Weight (kDa)

6.81

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 159
AciI CCGC 7 cut(s) 14, 113, 159, 212, 255, 262, 311
AclWI GGATC 2 cut(s) 55, 68
AcoI YGGCCR 1 cut(s) 15
AfiI CCNNNNNNNGG 3 cut(s) 158, 211, 341
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 98
AlwI GGATC 2 cut(s) 55, 68
AoxI GGCC 4 cut(s) 15, 149, 202, 216
ApaI GGGCCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 3 cut(s) 149, 202, 203
AsuII TTCGAA 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 206
BamHI GGATCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 206
BauI CACGAG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 23, 26, 75
BisI GCNGC 4 cut(s) 15, 135, 256, 311
BlsI GCNGC 4 cut(s) 16, 136, 257, 312
BmgT120I GGNCC 3 cut(s) 149, 202, 203
BmiI GGNNCC 2 cut(s) 62, 204
BmsI GCATC 2 cut(s) 228, 250
BoxI GACNNNNGTC 1 cut(s) 269
Bpu10I CCTNAGC 2 cut(s) 6, 153
Bpu14I TTCGAA 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 211, 341
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 67, 243
BseLI CCNNNNNNNGG 3 cut(s) 158, 211, 341
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 20, 144
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 4 cut(s) 17, 151, 204, 218
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 158, 211, 341
BsnI GGCC 4 cut(s) 17, 151, 204, 218
Bsp119I TTCGAA 1 cut(s) 180
Bsp120I GGGCCC 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 98, 206
Bsp143I GATC 2 cut(s) 60, 291
BspACI CCGC 7 cut(s) 14, 113, 159, 212, 255, 262, 311
BspANI GGCC 4 cut(s) 17, 151, 204, 218
BspCNI CTCAG 2 cut(s) 19, 145
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 62, 204
BspPI GGATC 2 cut(s) 55, 68
BspT104I TTCGAA 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 60, 291
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 3 cut(s) 161, 226, 260
BstDEI CTNAG 3 cut(s) 6, 153, 274
BstF5I GGATG 2 cut(s) 67, 243
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 2 cut(s) 63, 294
BstMBI GATC 2 cut(s) 60, 291
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 4 cut(s) 11, 134, 140, 331
BstPAI GACNNNNGTC 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 4 cut(s) 17, 151, 204, 218
BtsCI GGATG 2 cut(s) 67, 243
Cac8I GCNNGC 3 cut(s) 161, 226, 260
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 3 cut(s) 149, 202, 203
CviAII CATG 2 cut(s) 185, 267
DdeI CTNAG 3 cut(s) 6, 153, 274
DpnI GATC 2 cut(s) 62, 293
DpnII GATC 2 cut(s) 60, 291
EaeI YGGCCR 1 cut(s) 15
EciI GGCGGA 2 cut(s) 128, 227
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 188, 270
FaiI YATR 3 cut(s) 92, 186, 268
FatI CATG 2 cut(s) 184, 266
FauI CCCGC 1 cut(s) 152
Fnu4HI GCNGC 4 cut(s) 15, 135, 256, 311
FokI GGATG 2 cut(s) 54, 250
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 15, 135, 256, 311
GlaI GCGC 1 cut(s) 158
GluI GCNGC 4 cut(s) 15, 135, 256, 311
HaeIII GGCC 4 cut(s) 17, 151, 204, 218
HhaI GCGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 188, 270
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 1 cut(s) 303
Hpy166II GTNNAC 1 cut(s) 319
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 279
HpyCH4V TGCA 3 cut(s) 108, 128, 241
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 134, 140, 331
HpyF3I CTNAG 3 cut(s) 6, 153, 274
Hsp92II CATG 2 cut(s) 188, 270
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 60, 291
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 3 cut(s) 88, 165, 219
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 2 cut(s) 228, 250
MalI GATC 2 cut(s) 62, 293
MboI GATC 2 cut(s) 60, 291
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 2 cut(s) 98, 206
MnlI CCTC 3 cut(s) 202, 208, 239
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 87
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 4 cut(s) 11, 134, 140, 331
NdeII GATC 2 cut(s) 60, 291
NlaIII CATG 2 cut(s) 188, 270
NlaIV GGNNCC 2 cut(s) 62, 204
NsiI ATGCAT 1 cut(s) 243
NspV TTCGAA 1 cut(s) 180
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 4 cut(s) 16, 136, 257, 312
Ple19I CGATCG 1 cut(s) 294
PshAI GACNNNNGTC 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 62, 204
PspOMI GGGCCC 1 cut(s) 202
PspPI GGNCC 3 cut(s) 149, 202, 203
PsuI RGATCY 1 cut(s) 60
PvuI CGATCG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 4 cut(s) 15, 135, 256, 311
Sau3AI GATC 2 cut(s) 60, 291
Sau96I GGNCC 3 cut(s) 149, 202, 203
SduI GDGCHC 2 cut(s) 98, 206
SetI ASST 5 cut(s) 12, 87, 172, 280, 290
SfaNI GCATC 2 cut(s) 228, 250
SfuI TTCGAA 1 cut(s) 180
SsiI CCGC 7 cut(s) 14, 113, 159, 212, 255, 262, 311
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 2 cut(s) 180, 290
TauI GCSGC 3 cut(s) 17, 258, 313
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.