Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011612

Physical Location & Seq

Genomic Coordinates Forward (+)

3909640 .. 3912745

Gene Structure 3106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTCAGGTGGCGTCCATCAAATATGATGAACTTATTCGCATCAATGACCCGTATTGGATCCCCCATCCCACTGCTATCAAGGTTAATATGTGCTCGTTCTGGAGCAAGGCTGATAACAAGGTCGCATTGGCCGCTATTGCTCGTGGGGCTCAGCGTGGTCTCGTAGCCATCGGCGCTGAACATGGTTTGGCTTCGTCGGCCCCAGAGGCGGAGGCCAAGGCGTGCCTCTTCGGGGTTAGACTGGCGGAGGTACGTATGCTGGATTTGGGTAATGTTATTTTCGAGACACACTTCTTCAATGATTTTGTTGGCGGCCACTATGCCGATGCATCTTCTGTCAGGCAGCTTGCAGACATGGGTCTCAGGTGGGAGAAAGTTGATCGTGCCGCAAGTCAACTTGCCCGACTTGCCTATGACGCGAACAACAGACGGTGTGTGCGCCTCTTCCGCTCCTCTAAAAGCCTATTCGCTTCACGCCAAACCCACCGCAACGTCTCTCACCTCATCTGCGTATTCCTTCAGGACCTTGCCCCCACCGGGTCCCACCTGTTTGACAATCGCTTAGTGCACCCTCCCCCCATGGCTTATAACCCCCACGTCTACGGCCTCTACAACTTTACCTACGTCCCGTTCGAGCCCCACCTCGGCTGCTCTCTCTGCGACACCCGCTCCTTCCAGATAGACCGCCCCACTCTATTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

235

Amino Acids

26.4

Weight (kDa)

8.94

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171131 RchiOBHm_Chr2g0171241 RchiOBHm_Chr5g0041781
rosa_laevigata	RLG00000022005 RLG00000022007
rosa_multiflora	Rmu_sc0003517.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080920
rosa_samantha	Rh1AG148400 Rh1BG074400 Rh1CG139900 Rh1DG155200 Rh2AG625800 Rh2AG627600 Rh2AG639000 Rh2BG638200 Rh2CG605200 Rh2CG607000 Rh2DG653900 Rh2DG655400
rosa_wichuraiana	Rw2G051840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	591
AccBSI	CCGCTC	2 cut(s)	453, 672
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	1 cut(s)	422
AciI	CCGC	9 cut(s)	135, 212, 248, 315, 390, 451, 490, 670, 688
AclWI	GGATC	2 cut(s)	55, 68
AcoI	YGGCCR	2 cut(s)	132, 316
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	4 cut(s)	211, 235, 540, 647
AgsI	TTSAA	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	601
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw21I	GWGCWC	2 cut(s)	98, 573
Alw26I	GTCTC	4 cut(s)	167, 281, 368, 502
Alw44I	GTGCAC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	55, 68
AoxI	GGCC	5 cut(s)	132, 201, 216, 316, 607
ApaLI	GTGCAC	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	346, 651
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	179, 444
AspS9I	GGNCC	3 cut(s)	202, 526, 543
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	526, 543
BaeGI	GKGCMC	1 cut(s)	573
BamHI	GGATCC	1 cut(s)	60
BanII	GRGCYC	2 cut(s)	154, 642
BauI	CACGAG	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	98, 573
BbvI	GCAGC	2 cut(s)	358, 638
BccI	CCATC	3 cut(s)	26, 75, 179
BceAI	ACGGC	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	4 cut(s)	167, 281, 368, 502
BfoI	RGCGCY	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	5 cut(s)	135, 316, 347, 390, 652
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	5 cut(s)	136, 317, 348, 391, 653
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	2 cut(s)	526, 543
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	202, 526, 543
BmiI	GGNNCC	4 cut(s)	62, 204, 544, 545
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	3 cut(s)	51, 319, 341
BoxI	GACNNNNGTC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	541
BsaAI	YACGTR	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	2 cut(s)	167, 368
BsaJI	CCNNGG	3 cut(s)	219, 582, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 235, 540, 647
Bse1I	ACTGG	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	219, 582, 646
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	4 cut(s)	211, 235, 540, 647
BseMII	CTCAG	3 cut(s)	20, 167, 379
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	2 cut(s)	358, 638
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	5 cut(s)	134, 203, 218, 318, 609
BsiHKAI	GWGCWC	2 cut(s)	98, 573
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	2 cut(s)	529, 614
BslI	CCNNNNNNNGG	4 cut(s)	211, 235, 540, 647
BsmAI	GTCTC	4 cut(s)	167, 281, 368, 502
BsmBI	CGTCTC	1 cut(s)	502
BsmFI	GGGAC	2 cut(s)	529, 614
BsnI	GGCC	5 cut(s)	134, 203, 218, 318, 609
Bso31I	GGTCTC	2 cut(s)	167, 368
Bsp1286I	GDGCHC	4 cut(s)	98, 154, 573, 642
Bsp143I	GATC	2 cut(s)	60, 382
Bsp1720I	GCTNAGC	1 cut(s)	153
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	9 cut(s)	135, 212, 248, 315, 390, 451, 490, 670, 688
BspANI	GGCC	5 cut(s)	134, 203, 218, 318, 609
BspCNI	CTCAG	3 cut(s)	19, 166, 378
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	4 cut(s)	62, 204, 544, 545
BspPI	GGATC	2 cut(s)	55, 68
BspTNI	GGTCTC	2 cut(s)	167, 368
BsrBI	CCGCTC	2 cut(s)	453, 672
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	3 cut(s)	219, 582, 646
BssMI	GATC	2 cut(s)	60, 382
BssNI	GRCGYC	1 cut(s)	14
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	219, 582
Bst2BI	CACGAG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	2 cut(s)	236, 452
BstACI	GRCGYC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	226, 351
BstDEI	CTNAG	4 cut(s)	6, 153, 365, 565
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	422
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	179, 444
BstKTI	GATC	2 cut(s)	63, 385
BstMAI	GTCTC	4 cut(s)	167, 281, 368, 502
BstMBI	GATC	2 cut(s)	60, 382
BstPAI	GACNNNNGTC	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	539
BstSLI	GKGCMC	1 cut(s)	573
BstSNI	TACGTA	1 cut(s)	257
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	358, 638
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	5 cut(s)	134, 203, 218, 318, 609
BtgI	CCRYGG	1 cut(s)	582
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	226, 351
CfoI	GCGC	2 cut(s)	179, 444
Cfr13I	GGNCC	3 cut(s)	202, 526, 543
CseI	GACGC	2 cut(s)	3, 428
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	3 cut(s)	185, 358, 583
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	4 cut(s)	6, 153, 365, 565
DpnI	GATC	2 cut(s)	62, 384
DpnII	GATC	2 cut(s)	60, 382
EaeI	YGGCCR	2 cut(s)	132, 316
Eam1104I	CTCTTC	2 cut(s)	236, 452
EarI	CTCTTC	2 cut(s)	236, 452
EciI	GGCGGA	2 cut(s)	227, 263
Eco105I	TACGTA	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	219, 582
Eco24I	GRGCYC	2 cut(s)	154, 642
Eco31I	GGTCTC	2 cut(s)	167, 368
Eco47I	GGWCC	2 cut(s)	526, 543
Eco57I	CTGAAG	1 cut(s)	506
EcoO109I	RGGNCCY	2 cut(s)	526, 543
EcoT14I	CCWWGG	2 cut(s)	219, 582
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	2 cut(s)	154, 642
ErhI	CCWWGG	2 cut(s)	219, 582
Esp3I	CGTCTC	1 cut(s)	502
FaeI	CATG	3 cut(s)	188, 361, 586
FaiI	YATR	9 cut(s)	27, 92, 186, 260, 324, 359, 417, 584, 591
FaqI	GGGAC	2 cut(s)	529, 614
FatI	CATG	3 cut(s)	184, 357, 582
FauI	CCCGC	1 cut(s)	677
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	5 cut(s)	135, 316, 347, 390, 652
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	2 cut(s)	154, 642
Fsp4HI	GCNGC	5 cut(s)	135, 316, 347, 390, 652
GlaI	GCGC	2 cut(s)	178, 443
GluI	GCNGC	5 cut(s)	135, 316, 347, 390, 652
GsuI	CTGGAG	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	5 cut(s)	134, 203, 218, 318, 609
HapII	CCGG	1 cut(s)	540
HgaI	GACGC	2 cut(s)	3, 428
HhaI	GCGC	2 cut(s)	179, 444
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	188, 361, 586
Hin6I	GCGC	2 cut(s)	177, 442
HinP1I	GCGC	2 cut(s)	177, 442
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	3 cut(s)	398, 571, 604
Hpy188III	TCNNGA	4 cut(s)	103, 286, 524, 679
Hpy8I	GTNNAC	3 cut(s)	398, 571, 604
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	530, 685
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4IV	ACGT	4 cut(s)	256, 495, 600, 627
HpyCH4V	TGCA	3 cut(s)	332, 353, 571
HpyF3I	CTNAG	4 cut(s)	6, 153, 365, 565
HpySE526I	ACGT	4 cut(s)	256, 495, 600, 627
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	188, 361, 586
HspAI	GCGC	2 cut(s)	177, 442
KflI	GGGWCCC	1 cut(s)	543
Kzo9I	GATC	2 cut(s)	60, 382
LmnI	GCTCC	3 cut(s)	105, 458, 677
Lsp1109I	GCAGC	2 cut(s)	358, 638
LweI	GCATC	3 cut(s)	51, 319, 341
MaeII	ACGT	4 cut(s)	256, 495, 600, 627
MalI	GATC	2 cut(s)	62, 384
MbiI	CCGCTC	2 cut(s)	453, 672
MboI	GATC	2 cut(s)	60, 382
MboII	GAAGA	4 cut(s)	223, 289, 327, 439
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	4 cut(s)	98, 154, 573, 642
Mph1103I	ATGCAT	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	541
MvnI	CGCG	1 cut(s)	422
NciI	CCSGG	1 cut(s)	541
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	2 cut(s)	60, 382
NlaIII	CATG	3 cut(s)	188, 361, 586
NlaIV	GGNNCC	4 cut(s)	62, 204, 544, 545
NmeAIII	GCCGAG	1 cut(s)	627
NsiI	ATGCAT	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	136, 317, 348, 391, 653
Ppu21I	YACGTR	1 cut(s)	257
PpuMI	RGGWCCY	2 cut(s)	526, 543
PshAI	GACNNNNGTC	1 cut(s)	360
PsiI	TTATAA	1 cut(s)	591
Psp5II	RGGWCCY	2 cut(s)	526, 543
PspN4I	GGNNCC	4 cut(s)	62, 204, 544, 545
PspPI	GGNCC	3 cut(s)	202, 526, 543
PspPPI	RGGWCCY	2 cut(s)	526, 543
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	5 cut(s)	135, 316, 347, 390, 652
Sau3AI	GATC	2 cut(s)	60, 382
Sau96I	GGNCC	3 cut(s)	202, 526, 543
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	4 cut(s)	98, 154, 573, 642
SfaNI	GCATC	3 cut(s)	51, 319, 341
SinI	GGWCC	2 cut(s)	526, 543
SnaBI	TACGTA	1 cut(s)	257
SsiI	CCGC	9 cut(s)	135, 212, 248, 315, 390, 451, 490, 670, 688
StyD4I	CCNGG	1 cut(s)	539
StyI	CCWWGG	2 cut(s)	219, 582
TaaI	ACNGT	1 cut(s)	435
TaiI	ACGT	4 cut(s)	259, 498, 603, 630
TaqI	TCGA	2 cut(s)	285, 636
TauI	GCSGC	3 cut(s)	137, 318, 392
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	2 cut(s)	346, 651
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	79
VneI	GTGCAC	1 cut(s)	569
VpaK11BI	GGWCC	2 cut(s)	526, 543
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.