Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011612

Physical Location & Seq

Genomic Coordinates Reverse (-)

86285457 .. 86289661

Gene Structure 4205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG639000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCAGATGAGGAGGTTGTTCTGAACGTCCATCCTGGTCCTGATGAATTTATCAGGATAAATGACCCATACAACGGCCTAAGTGTGAAGAAGCCCAAACTTTTGGCCAAATTGAGCAGAGATGGGCTTTGCTTCACGTCGGGCTTGGATTTAGAGTTAGGTGCTGAAATTTTCGCTGGAGGTGTAGTATCACTGCGTCCTCATGCATTCCGGGTTAAGTTGAATTGCAGCTCCTTTTGGGTCAAGTCAAGTTGTAAGGTTGGATTATATGTCATTGCACGCGATGCTGATTGTTCTCTAGTCTTTTCTGAATGTGAGCTTGGGGTGGCCACATCGGCACCTGATGCAGAAGCAAAAGCATGCCTTATGGCTTTACGACTTGCCACAGAACGACTTGCAGGCCGACCATTTGTTAAAGTGTTAGGTGCTGAAGTTTTCGCTGGAGGTGCAGTATCACTGGTTGTCAACGATAGATTCTGGCATCCTCATGCATTCCGGGTTAAGTTGAATTGTAGCTCCTTTTGGGTCAAGTCAAGTTGTAAGGTTGGATTATGTGTCATTGTACGTGATGCTGATCGTTCTCTAGTCTTTTCTGAATGTGAGCTTGGGGTGGCCACATCGTCACCTGATGCAGAAGCAAAAGCGTGCCTCATGGCTTTACGGCTTGCCACAGAACGACTTGCAGGCCGACCATTTGTGCTTGAGTCTCACTTTTTCCGAACGCCCTTCACGACACTCGAAGATTTGTTGGAATCTTTGTCGAATGATATTTTTCTGTCATTTACTCGAAATTTGTTGGAATCTGAGCTTTTAACACTGGATTTAGTGTTAGGTGCTGAAATTTTCACTGGAGGTGCAATATCACTGGTTGTCAATGATAGATTCTGGCGTCCTCATGCATTCCGGGTTAAGTTGAATTGCAGCTCCTTTTGGGTCAAGTCAGGTTGTAAGGTTGGATTATATGTCATTGTATGCGATGCTGATTGTTCTCTGGTCTTTTCTGAATGTGAGCTTGGGGTGGCCACATTGGCACTTGATGCAGAACCAAAACCATGCCTCATGGTTTTACGACTTGCCACAGAAAGACTTGCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

39.78

Weight (kDa)

5.95

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171131 RchiOBHm_Chr2g0171241 RchiOBHm_Chr5g0041781
rosa_laevigata	RLG00000022005 RLG00000022007
rosa_multiflora	Rmu_sc0003517.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080920
rosa_samantha	Rh1AG148400 Rh1BG074400 Rh1CG139900 Rh1DG155200 Rh2AG625800 Rh2AG627600 Rh2AG639000 Rh2BG638200 Rh2CG605200 Rh2CG607000 Rh2DG653900 Rh2DG655400
rosa_wichuraiana	Rw2G051840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccII	CGCG	1 cut(s)	282
AcoI	YGGCCR	4 cut(s)	105, 327, 612, 1020
AcsI	RAATTY	4 cut(s)	47, 168, 790, 840
AcuI	CTGAAG	1 cut(s)	450
AcyI	GRCGYC	1 cut(s)	889
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	223, 508, 916
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	6 cut(s)	303, 335, 588, 620, 996, 1028
AluBI	AGCT	7 cut(s)	231, 319, 516, 604, 808, 924, 1012
AluI	AGCT	7 cut(s)	231, 319, 516, 604, 808, 924, 1012
Alw26I	GTCTC	1 cut(s)	711
AoxI	GGCC	7 cut(s)	76, 105, 327, 400, 612, 685, 1020
ApeKI	GCWGC	2 cut(s)	228, 921
ApoI	RAATTY	4 cut(s)	47, 168, 790, 840
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	3 cut(s)	212, 497, 905
AsuHPI	GGTGA	1 cut(s)	615
AvaII	GGWCC	1 cut(s)	38
BalI	TGGCCA	4 cut(s)	107, 329, 614, 1022
BanI	GGYRCC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	240, 933
BccI	CCATC	2 cut(s)	39, 116
BceAI	ACGGC	2 cut(s)	91, 677
BciT130I	CCWGG	1 cut(s)	36
BcnI	CCSGG	3 cut(s)	212, 497, 905
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	2 cut(s)	299, 584
BglI	GCCNNNNNGGC	2 cut(s)	335, 1028
BisI	GCNGC	2 cut(s)	229, 922
BlsI	GCNGC	2 cut(s)	230, 923
Bme1390I	CCNGG	4 cut(s)	36, 212, 497, 905
Bme18I	GGWCC	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	4 cut(s)	36, 212, 497, 905
BmsI	GCATC	7 cut(s)	274, 334, 490, 559, 619, 967, 1027
BpmI	CTGGAG	3 cut(s)	198, 462, 870
BpuEI	CTTGAG	1 cut(s)	722
BpuMI	CCSGG	3 cut(s)	212, 497, 905
BsaAI	YACGTR	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	889
BsaXI	ACNNNNNCTCC	4 cut(s)	171, 201, 435, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	4 cut(s)	462, 822, 853, 870
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	31, 481
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	4 cut(s)	462, 822, 853, 870
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	240, 933
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	7 cut(s)	78, 107, 329, 402, 614, 687, 1022
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	3 cut(s)	211, 496, 904
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	711
BsmI	GAATGC	3 cut(s)	206, 491, 899
BsnI	GGCC	7 cut(s)	78, 107, 329, 402, 614, 687, 1022
Bsp143I	GATC	1 cut(s)	574
BspANI	GGCC	7 cut(s)	78, 107, 329, 402, 614, 687, 1022
BspCNI	CTCAG	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	4 cut(s)	462, 822, 853, 870
BssMI	GATC	1 cut(s)	574
BssNI	GRCGYC	1 cut(s)	889
Bst2UI	CCWGG	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	889
BstAPI	GCANNNNNTGC	3 cut(s)	284, 344, 1037
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	7 cut(s)	280, 361, 400, 646, 666, 685, 1093
BstDEI	CTNAG	2 cut(s)	80, 804
BstF5I	GGATG	2 cut(s)	31, 481
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	6 cut(s)	284, 335, 344, 446, 1028, 1037
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	363
BstSCI	CCNGG	4 cut(s)	34, 210, 495, 903
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	240, 933
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	7 cut(s)	78, 107, 329, 402, 614, 687, 1022
BtgZI	GCGATG	2 cut(s)	297, 990
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	31, 481
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	5 cut(s)	191, 455, 815, 846, 863
Cac8I	GCNNGC	7 cut(s)	280, 361, 400, 646, 666, 685, 1093
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	2 cut(s)	185, 878
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	7 cut(s)	203, 360, 488, 652, 896, 1053, 1060
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	2 cut(s)	80, 804
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
EaeI	YGGCCR	4 cut(s)	105, 327, 612, 1020
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	34
EcoT22I	ATGCAT	3 cut(s)	208, 493, 901
FaeI	CATG	7 cut(s)	206, 363, 491, 655, 899, 1056, 1063
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	7 cut(s)	202, 359, 487, 651, 895, 1052, 1059
Fnu4HI	GCNGC	2 cut(s)	229, 922
FokI	GGATG	2 cut(s)	18, 468
Fsp4HI	GCNGC	2 cut(s)	229, 922
FspBI	CTAG	2 cut(s)	299, 584
GluI	GCNGC	2 cut(s)	229, 922
GsuI	CTGGAG	3 cut(s)	198, 462, 870
HaeIII	GGCC	7 cut(s)	78, 107, 329, 402, 614, 687, 1022
HapII	CCGG	3 cut(s)	211, 496, 904
HgaI	GACGC	2 cut(s)	185, 878
Hin1I	GRCGYC	1 cut(s)	889
Hin1II	CATG	7 cut(s)	206, 363, 491, 655, 899, 1056, 1063
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	5 cut(s)	474, 704, 752, 800, 882
HpaII	CCGG	3 cut(s)	211, 496, 904
HphI	GGTGA	1 cut(s)	615
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	6 cut(s)	24, 310, 595, 719, 805, 1003
Hpy188III	TCNNGA	3 cut(s)	41, 55, 730
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	736
HpyCH4IV	ACGT	3 cut(s)	27, 137, 565
HpyF10VI	GCNNNNNNNGC	6 cut(s)	284, 335, 344, 446, 1028, 1037
HpyF3I	CTNAG	2 cut(s)	80, 804
HpySE526I	ACGT	3 cut(s)	27, 137, 565
Hsp92I	GRCGYC	1 cut(s)	889
Hsp92II	CATG	7 cut(s)	206, 363, 491, 655, 899, 1056, 1063
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	3 cut(s)	236, 521, 929
Lsp1109I	GCAGC	2 cut(s)	240, 933
LweI	GCATC	7 cut(s)	274, 334, 490, 559, 619, 967, 1027
MaeI	CTAG	2 cut(s)	299, 584
MaeII	ACGT	3 cut(s)	27, 137, 565
MaeIII	GTNAC	1 cut(s)	621
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	2 cut(s)	100, 752
MlsI	TGGCCA	4 cut(s)	107, 329, 614, 1022
MluCI	AATT	8 cut(s)	47, 110, 168, 223, 508, 790, 840, 916
MluNI	TGGCCA	4 cut(s)	107, 329, 614, 1022
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	5 cut(s)	241, 526, 729, 777, 934
Mox20I	TGGCCA	4 cut(s)	107, 329, 614, 1022
Mph1103I	ATGCAT	3 cut(s)	208, 493, 901
MscI	TGGCCA	4 cut(s)	107, 329, 614, 1022
MseI	TTAA	5 cut(s)	216, 414, 501, 812, 909
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	4 cut(s)	107, 329, 614, 1022
MspI	CCGG	3 cut(s)	211, 496, 904
MspR9I	CCNGG	4 cut(s)	36, 212, 497, 905
Mva1269I	GAATGC	3 cut(s)	206, 491, 899
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	6 cut(s)	284, 335, 344, 446, 1028, 1037
NciI	CCSGG	3 cut(s)	212, 497, 905
NdeII	GATC	1 cut(s)	574
NlaIII	CATG	7 cut(s)	206, 363, 491, 655, 899, 1056, 1063
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	621
NsiI	ATGCAT	3 cut(s)	208, 493, 901
NspI	RCATGY	1 cut(s)	363
PaeI	GCATGC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	728
PctI	GAATGC	3 cut(s)	206, 491, 899
PfeI	GAWTC	4 cut(s)	474, 752, 800, 882
PkrI	GCNGC	2 cut(s)	230, 923
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Ppu21I	YACGTR	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	5 cut(s)	216, 414, 501, 812, 909
SatI	GCNGC	2 cut(s)	229, 922
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	4 cut(s)	36, 212, 497, 905
SfaNI	GCATC	7 cut(s)	274, 334, 490, 559, 619, 967, 1027
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
SphI	GCATGC	1 cut(s)	363
Sse9I	AATT	8 cut(s)	47, 110, 168, 223, 508, 790, 840, 916
SspMI	CTAG	2 cut(s)	299, 584
StyD4I	CCNGG	4 cut(s)	34, 210, 495, 903
TaiI	ACGT	3 cut(s)	30, 140, 568
TaqI	TCGA	3 cut(s)	738, 761, 787
TasI	AATT	8 cut(s)	47, 110, 168, 223, 508, 790, 840, 916
TfiI	GAWTC	4 cut(s)	474, 752, 800, 882
Tru1I	TTAA	5 cut(s)	216, 414, 501, 812, 909
Tru9I	TTAA	5 cut(s)	216, 414, 501, 812, 909
TscAI	CASTG	5 cut(s)	198, 462, 822, 853, 870
TseFI	GTSAC	1 cut(s)	621
TseI	GCWGC	2 cut(s)	228, 921
Tsp45I	GTSAC	1 cut(s)	621
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	5 cut(s)	198, 462, 822, 853, 870
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	4 cut(s)	47, 168, 790, 840
XceI	RCATGY	1 cut(s)	363
XspI	CTAG	2 cut(s)	299, 584
Zsp2I	ATGCAT	3 cut(s)	208, 493, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.