Rh2AG627600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011612
Physical Location & Seq
Forward (+)
85311075 .. 85312236
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG627600.1

Sequence Viewer

Length: 522 bp
ATGGCTGAGGTTCTTGAGTTGGATGCTGAAATCGTCGGTGGAGGGGGTGAACCACTTGTTGTCAATGATAGATTCTGGCGTCCTCATCCGGTCCGTGTCAAGGTGAACTGCAGTTCCTTTTGGGTGAAGGCCAGTTGCAGAGTTGGACTTGGTGTTGTGGCACGGGATACTGATCAATCTGTGGTTTTTACTGAGTGTGAAGTTGGGGTGGCCACATCGGCACCTGATGCGGCGGCAAAAGCTTGCCTAATGGGTTTGCGTCTGGCAACTGAACGACTTGCTGGCCGTCCGTATGTGCTCGAGTCCGACTTTTTCCGTTTGCCCTTCTCGACATTTGAAGGTTTTGGCACATCCCTGGTACCATCAGTGGCTGGGTTGATCACCCGGTTCCACCAGGAGGATATTGAGTGGAGCAGGTGCGAACGGTTTGGAAATAGGACTGCTTCAATGATTGCCCAGCTCGCCTGTGAGGACAAATTGGTCGAGAATTGGAGGGAGAGGCTGGCAGTAGTCTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

173

Amino Acids

19.16

Weight (kDa)

5.19

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 405
AasI GACNNNNNNGTC 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 405
Acc65I GGTACC 1 cut(s) 358
AccB1I GGYRCC 2 cut(s) 220, 358
AciI CCGC 2 cut(s) 230, 233
AcoI YGGCCR 2 cut(s) 210, 283
AcyI GRCGYC 1 cut(s) 79
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 100, 397
AgsI TTSAA 2 cut(s) 338, 447
AjnI CCWGG 2 cut(s) 354, 393
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 2 cut(s) 242, 460
AluI AGCT 2 cut(s) 242, 460
Alw21I GWGCWC 1 cut(s) 300
AlwNI CAGNNNCTG 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 3 cut(s) 129, 210, 283
Asp718I GGTACC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 4 cut(s) 59, 115, 136, 373
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 91
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 2 cut(s) 220, 358
Bbv12I GWGCWC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 370
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 2 cut(s) 356, 395
BciVI GTATCC 1 cut(s) 160
BclI TGATCA 2 cut(s) 172, 378
BcnI CCSGG 1 cut(s) 385
BfmI CTRYAG 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 405
BfuI GTATCC 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 2 cut(s) 231, 234
BlsI GCNGC 2 cut(s) 232, 235
Bme1390I CCNGG 3 cut(s) 356, 385, 395
Bme18I GGWCC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 3 cut(s) 222, 360, 389
BmrFI CCNGG 3 cut(s) 356, 385, 395
BmsI GCATC 2 cut(s) 13, 217
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 385
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 397
Bse1I ACTGG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 2 cut(s) 356, 395
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 3 cut(s) 28, 85, 350
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 100, 397
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 132
BseYI CCCAGC 2 cut(s) 371, 456
BshFI GGCC 3 cut(s) 131, 212, 285
BshNI GGYRCC 2 cut(s) 220, 358
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 2 cut(s) 89, 385
BslI CCNNNNNNNGG 2 cut(s) 100, 397
BsnI GGCC 3 cut(s) 131, 212, 285
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 172, 378
BspACI CCGC 2 cut(s) 230, 233
BspANI GGCC 3 cut(s) 131, 212, 285
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 222, 360, 389
BspMAI CTGCAG 1 cut(s) 113
BspMI ACCTGC 1 cut(s) 405
BspT107I GGYRCC 2 cut(s) 220, 358
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 2 cut(s) 172, 378
BssNI GRCGYC 1 cut(s) 79
Bst2UI CCWGG 2 cut(s) 356, 395
Bst4CI ACNGT 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 79
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 4 cut(s) 244, 283, 462, 504
BstDEI CTNAG 2 cut(s) 6, 192
BstF5I GGATG 3 cut(s) 28, 85, 350
BstKTI GATC 2 cut(s) 175, 381
BstMBI GATC 2 cut(s) 172, 378
BstMWI GCNNNNNNNGC 4 cut(s) 218, 227, 239, 461
BstNI CCWGG 2 cut(s) 356, 395
BstSCI CCNGG 3 cut(s) 354, 383, 393
BstSFI CTRYAG 1 cut(s) 109
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 3 cut(s) 131, 212, 285
BtsCI GGATG 3 cut(s) 28, 85, 350
BtsIMutI CAGTG 1 cut(s) 372
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 4 cut(s) 244, 283, 462, 504
CaiI CAGNNNCTG 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 91
CpoI CGGWCCG 1 cut(s) 91
CseI GACGC 2 cut(s) 68, 248
Csp6I GTAC 1 cut(s) 359
CspI CGGWCCG 1 cut(s) 91
CviJI RGCY 8 cut(s) 5, 131, 212, 242, 285, 371, 460, 502
CviKI_1 RGCY 8 cut(s) 5, 131, 212, 242, 285, 371, 460, 502
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 2 cut(s) 6, 192
DpnI GATC 2 cut(s) 174, 380
DpnII GATC 2 cut(s) 172, 378
DrdI GACNNNNNNGTC 1 cut(s) 479
DseDI GACNNNNNNGTC 1 cut(s) 479
EaeI YGGCCR 2 cut(s) 210, 283
Eco47I GGWCC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 354, 393
FaiI YATR 2 cut(s) 294, 516
FbaI TGATCA 2 cut(s) 172, 378
Fnu4HI GCNGC 2 cut(s) 231, 234
FokI GGATG 3 cut(s) 35, 72, 337
Fsp4HI GCNGC 2 cut(s) 231, 234
GluI GCNGC 2 cut(s) 231, 234
GsaI CCCAGC 2 cut(s) 375, 460
HaeIII GGCC 3 cut(s) 131, 212, 285
HapII CCGG 2 cut(s) 89, 385
HgaI GACGC 2 cut(s) 68, 248
Hin1I GRCGYC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 2 cut(s) 72, 302
HpaII CCGG 2 cut(s) 89, 385
HphI GGTGA 4 cut(s) 59, 115, 136, 373
Hpy166II GTNNAC 2 cut(s) 50, 106
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 3 cut(s) 14, 328, 484
Hpy8I GTNNAC 2 cut(s) 50, 106
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 121, 332, 334
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4V TGCA 2 cut(s) 111, 138
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 227, 239, 461
HpyF3I CTNAG 2 cut(s) 6, 192
Hsp92I GRCGYC 1 cut(s) 79
KpnI GGTACC 1 cut(s) 362
Ksp22I TGATCA 2 cut(s) 172, 378
Kzo9I GATC 2 cut(s) 172, 378
LmnI GCTCC 1 cut(s) 411
LweI GCATC 2 cut(s) 13, 217
MalI GATC 2 cut(s) 174, 380
MboI GATC 2 cut(s) 172, 378
MhlI GDGCHC 1 cut(s) 300
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 2 cut(s) 476, 487
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 124, 330
MnlI CCTC 6 cut(s) 35, 93, 391, 463, 486, 492
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 2 cut(s) 89, 385
MspR9I CCNGG 3 cut(s) 356, 385, 395
MvaI CCWGG 2 cut(s) 356, 395
MwoI GCNNNNNNNGC 4 cut(s) 218, 227, 239, 461
NciI CCSGG 1 cut(s) 385
NdeII GATC 2 cut(s) 172, 378
NlaIV GGNNCC 3 cut(s) 222, 360, 389
PaeR7I CTCGAG 1 cut(s) 299
PaqCI CACCTGC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 232, 235
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 2 cut(s) 354, 393
PspFI CCCAGC 2 cut(s) 371, 456
PspGI CCWGG 2 cut(s) 354, 393
PspN4I GGNNCC 3 cut(s) 222, 360, 389
PspPI GGNCC 1 cut(s) 91
PspXI VCTCGAGB 1 cut(s) 299
PstI CTGCAG 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
Rsr2I CGGWCCG 1 cut(s) 91
RsrII CGGWCCG 1 cut(s) 91
SatI GCNGC 2 cut(s) 231, 234
Sau3AI GATC 2 cut(s) 172, 378
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 3 cut(s) 356, 385, 395
SduI GDGCHC 1 cut(s) 300
SetI ASST 7 cut(s) 12, 105, 226, 244, 343, 419, 462
SfaNI GCATC 2 cut(s) 13, 217
SfcI CTRYAG 1 cut(s) 109
Sfr274I CTCGAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 91
SlaI CTCGAG 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 14, 299
SmoI CTYRAG 2 cut(s) 14, 299
Sse9I AATT 2 cut(s) 476, 487
SsiI CCGC 2 cut(s) 230, 233
StyD4I CCNGG 3 cut(s) 354, 383, 393
TaaI ACNGT 1 cut(s) 426
TaqI TCGA 3 cut(s) 300, 329, 483
TasI AATT 2 cut(s) 476, 487
TauI GCSGC 2 cut(s) 233, 236
TfiI GAWTC 1 cut(s) 72
TscAI CASTG 1 cut(s) 372
TspGWI ACGGA 3 cut(s) 83, 279, 305
TspRI CASTG 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.