Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011612

Physical Location & Seq

Genomic Coordinates Reverse (-)

84961876 .. 84963268

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG625800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTCAGGTTGCTTCCAACAATCATGATGGAATTATTCACATCAATGACCCGTATTGGATCCCCCATCCCACAGCTATCAAGGTTAATATGTGCTCGTTCTGGTGCAAGGCCGATAATAAGGTTGCATTGGCTGCTATTGCTCGTGGGCCGCAGCGAGATGTTGAAGCTATCGGCACTGATCATTGTTTGGCTTCGTCGGCCCCAGATGCGGAGGCCAAGGCGTGCCTATTTGGGGTCAGACTGGCGGAGGTAGGTATGCTGGATTTGGGTAATGTTGTTTTCGAAACACATTTCTTCAATGACTTTGATGGGGGGCACTATGCGGATGCATCTTCTGTGAGGCGGCTTGCAGGCATGGGGCTCAGGTGGGAGAAAGTTGATCGCTCCAAGAATCGTGCCGCAAGTCAACTTGCCCGACTTGCCTATGACGGTAAGTTGGGCAGTGGCTGGAAGGATAGGGTGGTTATCTCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.39

Weight (kDa)

7.0

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171131 RchiOBHm_Chr2g0171241 RchiOBHm_Chr5g0041781
rosa_laevigata	RLG00000022005 RLG00000022007
rosa_multiflora	Rmu_sc0003517.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080920
rosa_samantha	Rh1AG148400 Rh1BG074400 Rh1CG139900 Rh1DG155200 Rh2AG625800 Rh2AG627600 Rh2AG639000 Rh2BG638200 Rh2CG605200 Rh2CG607000 Rh2DG653900 Rh2DG655400
rosa_wichuraiana	Rw2G051840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	152, 212, 248, 326, 346, 402
AclWI	GGATC	2 cut(s)	55, 68
AfiI	CCNNNNNNNGG	2 cut(s)	211, 235
AgsI	TTSAA	2 cut(s)	167, 301
AluBI	AGCT	2 cut(s)	77, 170
AluI	AGCT	2 cut(s)	77, 170
Alw21I	GWGCWC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	55, 68
AlwNI	CAGNNNCTG	1 cut(s)	450
AoxI	GGCC	4 cut(s)	111, 149, 201, 216
ApeKI	GCWGC	2 cut(s)	134, 154
AspS9I	GGNCC	2 cut(s)	149, 202
AsuII	TTCGAA	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	366
BauI	CACGAG	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	121, 166
BccI	CCATC	3 cut(s)	23, 75, 305
BclI	TGATCA	1 cut(s)	181
BisI	GCNGC	5 cut(s)	135, 152, 155, 347, 402
BlsI	GCNGC	5 cut(s)	136, 153, 156, 348, 403
BmgT120I	GGNCC	2 cut(s)	149, 202
BmiI	GGNNCC	2 cut(s)	62, 204
BmsI	GCATC	3 cut(s)	199, 319, 341
Bpu10I	CCTNAGC	2 cut(s)	6, 365
Bpu14I	TTCGAA	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 235
Bse1I	ACTGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	67, 334
BseLI	CCNNNNNNNGG	2 cut(s)	211, 235
BseMII	CTCAG	2 cut(s)	20, 379
BseNI	ACTGG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	121, 166
BshFI	GGCC	4 cut(s)	113, 151, 203, 218
BsiHKAI	GWGCWC	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	211, 235
BsnI	GGCC	4 cut(s)	113, 151, 203, 218
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	98, 321, 366
Bsp143I	GATC	3 cut(s)	60, 181, 382
BspACI	CCGC	6 cut(s)	152, 212, 248, 326, 346, 402
BspANI	GGCC	4 cut(s)	113, 151, 203, 218
BspCNI	CTCAG	2 cut(s)	19, 378
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	62, 204
BspPI	GGATC	2 cut(s)	55, 68
BspT104I	TTCGAA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	3 cut(s)	60, 181, 382
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	3 cut(s)	226, 351, 355
BstDEI	CTNAG	2 cut(s)	6, 365
BstF5I	GGATG	2 cut(s)	67, 334
BstKTI	GATC	3 cut(s)	63, 184, 385
BstMBI	GATC	3 cut(s)	60, 181, 382
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 134, 140, 200, 209, 422
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	121, 166
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	113, 151, 203, 218
BtsCI	GGATG	2 cut(s)	67, 334
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	2 cut(s)	177, 451
Cac8I	GCNNGC	3 cut(s)	226, 351, 355
CaiI	CAGNNNCTG	1 cut(s)	450
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	149, 202
CviAII	CATG	2 cut(s)	26, 358
DdeI	CTNAG	2 cut(s)	6, 365
DpnI	GATC	3 cut(s)	62, 183, 384
DpnII	GATC	3 cut(s)	60, 181, 382
EciI	GGCGGA	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	29, 361
FaiI	YATR	7 cut(s)	27, 92, 260, 324, 359, 429, 475
FatI	CATG	2 cut(s)	25, 357
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	135, 152, 155, 347, 402
FokI	GGATG	2 cut(s)	54, 341
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	5 cut(s)	135, 152, 155, 347, 402
GluI	GCNGC	5 cut(s)	135, 152, 155, 347, 402
HaeIII	GGCC	4 cut(s)	113, 151, 203, 218
Hin1II	CATG	2 cut(s)	29, 361
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HinfI	GANTC	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	410
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	4 cut(s)	108, 128, 332, 353
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 134, 140, 200, 209, 422
HpyF3I	CTNAG	2 cut(s)	6, 365
Hsp92II	CATG	2 cut(s)	29, 361
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	60, 181, 382
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	7 cut(s)	88, 219, 230, 248, 339, 352, 436
Lsp1109I	GCAGC	2 cut(s)	121, 166
LweI	GCATC	3 cut(s)	199, 319, 341
MalI	GATC	3 cut(s)	62, 183, 384
MboI	GATC	3 cut(s)	60, 181, 382
MboII	GAAGA	2 cut(s)	289, 327
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	3 cut(s)	98, 321, 366
MluCI	AATT	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	3 cut(s)	208, 244, 336
Mph1103I	ATGCAT	1 cut(s)	334
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	45
MwoI	GCNNNNNNNGC	6 cut(s)	11, 134, 140, 200, 209, 422
NdeII	GATC	3 cut(s)	60, 181, 382
NlaIII	CATG	2 cut(s)	29, 361
NlaIV	GGNNCC	2 cut(s)	62, 204
NsiI	ATGCAT	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	285
PagI	TCATGA	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	5 cut(s)	136, 153, 156, 348, 403
PspN4I	GGNNCC	2 cut(s)	62, 204
PspPI	GGNCC	2 cut(s)	149, 202
PstNI	CAGNNNCTG	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	5 cut(s)	135, 152, 155, 347, 402
Sau3AI	GATC	3 cut(s)	60, 181, 382
Sau96I	GGNCC	2 cut(s)	149, 202
SduI	GDGCHC	3 cut(s)	98, 321, 366
SetI	ASST	8 cut(s)	12, 79, 87, 126, 172, 255, 259, 371
SfaNI	GCATC	3 cut(s)	199, 319, 341
SfuI	TTCGAA	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	45
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	6 cut(s)	152, 212, 248, 326, 346, 402
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	33
TauI	GCSGC	3 cut(s)	154, 349, 404
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	2 cut(s)	184, 451
TseI	GCWGC	2 cut(s)	134, 154
TspRI	CASTG	2 cut(s)	184, 451
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.