Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011612

Physical Location & Seq

Genomic Coordinates Forward (+)

11478803 .. 11488491

Gene Structure 9689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG074400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTCTATAATGTTCTGATTGGATTGCTGCCAGCACACAGAGAAAGAGGGATCGAAGGGAAATTATGGTCAGTTGCTGTAATCACGAATAATTTGAGGATCTTAGAGTCAAGGGAAGAATTTGCGGATCTTAGAGCCAAAGGGTTGGGGTATGGTTTTCTCAATTTGATTGATGTTTTTGTTGTTTCTCCTTTTTCCACTGATATTCATATGAAGTCTCCGGGAAGATCTGACATGGAGGCCATCTACTTTGATGAAGGTGTAAGGAACTCAAGACGACACCAATTGAAAACAAGAGCATTGTTGGGTTATGGAATGGGAGGTGGAAGACGGTCAAAATCAGATTGGAGATTCTGGCATCCTCATGCATTCCGGGTTAAGTTGAATTGCGGCTCCTTTTGGGTCAAGTCAAGTTGTAAGGTTGGATTATGTGTCATTGCACGCGATGCTGATCGTTCTCTGGTCTTTTCTGAATGTGAGCTTGGGGTGGCCACATCGGCACCTGATGCAGAAGCAAAAGCATGCCTCATGGCTTTACGACTTGCCACAGAACGACTTGCAAGCCGACCATTTGATTTAGAGTTAGGTGCTGAAATTTTCGCTGGAGGTGCAGTATCACTGGTCGTCAACGATAGATTCTGGAGTCCTCATGCATTCCAGGTTAAGTTGAATTGCATCTCCTTTTGGGTCAAGTCAAGTTGTAAGGTTGGATTATGTGTCATTGCACGCGATGCTGATCGTTCTCTGGTCTTTTCTGAATGTGAGCTTGGGGTGGCCACATCGGCACCTGATGCAGAAGCAAAAGCGTGCCTCATAGCTTTACGACTTGCCACAGAACAACTTGCAGGCCGACCATTTGTGCTTGAGTCTCATTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

293

Amino Acids

32.47

Weight (kDa)

8.68

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011612)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171131 RchiOBHm_Chr2g0171241 RchiOBHm_Chr5g0041781
rosa_laevigata	RLG00000022005 RLG00000022007
rosa_multiflora	Rmu_sc0003517.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080920
rosa_samantha	Rh1AG148400 Rh1BG074400 Rh1CG139900 Rh1DG155200 Rh2AG625800 Rh2AG627600 Rh2AG639000 Rh2BG638200 Rh2CG605200 Rh2CG607000 Rh2DG653900 Rh2DG655400
rosa_wichuraiana	Rw2G051840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	499, 784
AccII	CGCG	2 cut(s)	444, 729
AciI	CCGC	2 cut(s)	125, 390
AclWI	GGATC	3 cut(s)	59, 107, 135
AcoI	YGGCCR	2 cut(s)	489, 774
AcsI	RAATTY	2 cut(s)	119, 594
AgsI	TTSAA	3 cut(s)	289, 385, 670
AjnI	CCWGG	1 cut(s)	657
AjuI	GAANNNNNNNTTGG	4 cut(s)	465, 497, 750, 782
AluBI	AGCT	3 cut(s)	481, 766, 818
AluI	AGCT	3 cut(s)	481, 766, 818
Alw26I	GTCTC	2 cut(s)	222, 873
AlwI	GGATC	3 cut(s)	59, 107, 135
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	4 cut(s)	240, 489, 774, 847
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	2 cut(s)	119, 594
AsuC2I	CCSGG	2 cut(s)	222, 374
BalI	TGGCCA	2 cut(s)	491, 776
BanI	GGYRCC	2 cut(s)	499, 784
BbsI	GAAGAC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	659
BcnI	CCSGG	2 cut(s)	222, 374
BcoDI	GTCTC	2 cut(s)	222, 873
BglI	GCCNNNNNGGC	2 cut(s)	497, 782
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	2 cut(s)	29, 391
BlsI	GCNGC	2 cut(s)	30, 392
Bme1390I	CCNGG	3 cut(s)	222, 374, 659
BmiI	GGNNCC	3 cut(s)	394, 501, 786
BmrFI	CCNGG	3 cut(s)	222, 374, 659
BmsI	GCATC	6 cut(s)	367, 436, 496, 684, 721, 781
BpiI	GAAGAC	1 cut(s)	334
BpmI	CTGGAG	2 cut(s)	624, 661
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	222, 374
BsaBI	GATNNNNATC	2 cut(s)	450, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bse1I	ACTGG	1 cut(s)	624
Bse3DI	GCAATG	2 cut(s)	435, 720
Bse8I	GATNNNNATC	2 cut(s)	450, 735
BseBI	CCWGG	1 cut(s)	659
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	2 cut(s)	450, 735
BseMI	GCAATG	2 cut(s)	435, 720
BseNI	ACTGG	1 cut(s)	624
BseXI	GCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	2 cut(s)	444, 729
BshFI	GGCC	4 cut(s)	242, 491, 776, 849
BshNI	GGYRCC	2 cut(s)	499, 784
BsiSI	CCGG	2 cut(s)	221, 373
BsmAI	GTCTC	2 cut(s)	222, 873
BsmI	GAATGC	2 cut(s)	368, 653
BsnI	GGCC	4 cut(s)	242, 491, 776, 849
Bsp143I	GATC	6 cut(s)	51, 99, 127, 227, 451, 736
BspACI	CCGC	2 cut(s)	125, 390
BspANI	GGCC	4 cut(s)	242, 491, 776, 849
BspFNI	CGCG	2 cut(s)	444, 729
BspLI	GGNNCC	3 cut(s)	394, 501, 786
BspPI	GGATC	3 cut(s)	59, 107, 135
BspT107I	GGYRCC	2 cut(s)	499, 784
BsrDI	GCAATG	2 cut(s)	435, 720
BsrI	ACTGG	1 cut(s)	624
BssMI	GATC	6 cut(s)	51, 99, 127, 227, 451, 736
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	1 cut(s)	333
BstAPI	GCANNNNNTGC	4 cut(s)	446, 506, 731, 791
BstC8I	GCNNGC	7 cut(s)	33, 442, 523, 562, 727, 808, 847
BstDEI	CTNAG	2 cut(s)	103, 131
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	2 cut(s)	444, 729
BstKTI	GATC	6 cut(s)	54, 102, 130, 230, 454, 739
BstMAI	GTCTC	2 cut(s)	222, 873
BstMBI	GATC	6 cut(s)	51, 99, 127, 227, 451, 736
BstMWI	GCNNNNNNNGC	7 cut(s)	446, 497, 506, 608, 731, 782, 791
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	3 cut(s)	220, 372, 657
BstUI	CGCG	2 cut(s)	444, 729
BstV1I	GCAGC	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	3 cut(s)	99, 127, 227
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	3 cut(s)	99, 127, 227
BsuRI	GGCC	4 cut(s)	242, 491, 776, 849
BtgZI	GCGATG	2 cut(s)	459, 744
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	198, 617
Cac8I	GCNNGC	7 cut(s)	33, 442, 523, 562, 727, 808, 847
CaiI	CAGNNNCTG	1 cut(s)	77
CviAII	CATG	5 cut(s)	235, 365, 522, 529, 650
DdeI	CTNAG	2 cut(s)	103, 131
DpnI	GATC	6 cut(s)	53, 101, 129, 229, 453, 738
DpnII	GATC	6 cut(s)	51, 99, 127, 227, 451, 736
EaeI	YGGCCR	2 cut(s)	489, 774
EcoRII	CCWGG	1 cut(s)	657
EcoT22I	ATGCAT	2 cut(s)	370, 655
FaeI	CATG	5 cut(s)	238, 368, 525, 532, 653
FatI	CATG	5 cut(s)	234, 364, 521, 528, 649
FauNDI	CATATG	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	29, 391
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	29, 391
GluI	GCNGC	2 cut(s)	29, 391
GsuI	CTGGAG	2 cut(s)	624, 661
HaeIII	GGCC	4 cut(s)	242, 491, 776, 849
HapII	CCGG	2 cut(s)	221, 373
Hin1II	CATG	5 cut(s)	238, 368, 525, 532, 653
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	5 cut(s)	107, 351, 636, 643, 866
HpaII	CCGG	2 cut(s)	221, 373
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	6 cut(s)	18, 232, 343, 472, 757, 881
Hpy188III	TCNNGA	3 cut(s)	85, 273, 640
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	2 cut(s)	50, 251
HpyCH4III	ACNGT	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	7 cut(s)	446, 497, 506, 608, 731, 782, 791
HpyF3I	CTNAG	2 cut(s)	103, 131
Hsp92II	CATG	5 cut(s)	238, 368, 525, 532, 653
Kzo9I	GATC	6 cut(s)	51, 99, 127, 227, 451, 736
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	6 cut(s)	367, 436, 496, 684, 721, 781
MalI	GATC	6 cut(s)	53, 101, 129, 229, 453, 738
MboI	GATC	6 cut(s)	51, 99, 127, 227, 451, 736
MboII	GAAGA	3 cut(s)	128, 237, 339
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	3 cut(s)	99, 127, 227
MlsI	TGGCCA	2 cut(s)	491, 776
MluCI	AATT	8 cut(s)	62, 91, 119, 163, 284, 385, 594, 670
MluNI	TGGCCA	2 cut(s)	491, 776
MlyI	GAGTC	3 cut(s)	116, 652, 875
MmeI	TCCRAC	2 cut(s)	403, 688
MnlI	CCTC	9 cut(s)	41, 90, 232, 314, 372, 536, 599, 657, 821
Mox20I	TGGCCA	2 cut(s)	491, 776
Mph1103I	ATGCAT	2 cut(s)	370, 655
MscI	TGGCCA	2 cut(s)	491, 776
MseI	TTAA	2 cut(s)	378, 663
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	2 cut(s)	491, 776
MspI	CCGG	2 cut(s)	221, 373
MspR9I	CCNGG	3 cut(s)	222, 374, 659
MunI	CAATTG	1 cut(s)	284
Mva1269I	GAATGC	2 cut(s)	368, 653
MvaI	CCWGG	1 cut(s)	659
MvnI	CGCG	2 cut(s)	444, 729
MwoI	GCNNNNNNNGC	7 cut(s)	446, 497, 506, 608, 731, 782, 791
NciI	CCSGG	2 cut(s)	222, 374
NdeI	CATATG	1 cut(s)	210
NdeII	GATC	6 cut(s)	51, 99, 127, 227, 451, 736
NlaIII	CATG	5 cut(s)	238, 368, 525, 532, 653
NlaIV	GGNNCC	3 cut(s)	394, 501, 786
NsiI	ATGCAT	2 cut(s)	370, 655
NspI	RCATGY	1 cut(s)	525
PaeI	GCATGC	1 cut(s)	525
PctI	GAATGC	2 cut(s)	368, 653
PfeI	GAWTC	2 cut(s)	351, 636
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	30, 392
PleI	GAGTC	3 cut(s)	115, 651, 874
PpsI	GAGTC	3 cut(s)	115, 651, 874
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	394, 501, 786
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	3 cut(s)	99, 127, 227
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	378, 663
SatI	GCNGC	2 cut(s)	29, 391
Sau3AI	GATC	6 cut(s)	51, 99, 127, 227, 451, 736
SchI	GAGTC	3 cut(s)	116, 652, 875
ScrFI	CCNGG	3 cut(s)	222, 374, 659
SfaNI	GCATC	6 cut(s)	367, 436, 496, 684, 721, 781
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	2 cut(s)	271, 863
SmoI	CTYRAG	2 cut(s)	271, 863
SphI	GCATGC	1 cut(s)	525
Sse9I	AATT	8 cut(s)	62, 91, 119, 163, 284, 385, 594, 670
SsiI	CCGC	2 cut(s)	125, 390
StyD4I	CCNGG	3 cut(s)	220, 372, 657
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	54
TasI	AATT	8 cut(s)	62, 91, 119, 163, 284, 385, 594, 670
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	351, 636
Tru1I	TTAA	2 cut(s)	378, 663
Tru9I	TTAA	2 cut(s)	378, 663
TscAI	CASTG	2 cut(s)	205, 624
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	197, 227, 270
TspRI	CASTG	2 cut(s)	205, 624
XapI	RAATTY	2 cut(s)	119, 594
XceI	RCATGY	1 cut(s)	525
Zsp2I	ATGCAT	2 cut(s)	370, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.