Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016409

Physical Location & Seq

Genomic Coordinates Reverse (-)

8030967 .. 8031566

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATTTCGGTCGATTCAATTTCAATCGAATCTGGAAGAAGGGGTTTGAAGCTCTCGATGGTGAGACTAGAGACGTTGTATTCGTCAGGAGAGTCTTGAGATCAAGATTGAGCCAAGGAGCACAAGAAGAAGAAGTAGAAGTAGAAGCACCTTTGACCCATGCTGAGGCCTCCCGTGGTGCCACCATACTCAGAGCCTTGCCGGAGCACGACAACGTGATATCCTATATCACAAGCGGCGAGGTAGGGCCCGATTTTTACTGGGTGGTGGAATTATTTGATAAGAATATGTTCGATTTCATCTACGGACATCCTCACGAAGTGAACATGTCGATTATTCACATCATCATGCGTGCTTTGCTGCTGGAGGTGGAACATCTCCACGCGCATGGAGTAGTCCACCGCGATTTGAAGCCTACAAACGTGCTTATCAATCAAGTCACGGCTGATGTGAAGATAGGAGGCTTTGAGCAGGCCAGACGTACCGCTGGTTTTCCGGCTCCCCACCCGGAAGATGCTTACTCGCCGGTGCGTTGCACTAGCACATGGTACACGGCACCTGCAATGGTGGATCCAGGATTCAATTGTTGTCTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005524 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030554 GO:0031323 GO:0031326 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0097367 GO:0097472 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

199

Amino Acids

22.5

Weight (kDa)

5.65

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	55 - 190	7.2e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 161	3.4e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016409)

Species	Orthologous Gene IDs
malus_domestica	MD04G1180000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0459641 RchiOBHm_Chr3g0459651
rosa_laevigata	RLG00000025081 RLG00000025082
rosa_multiflora	Rmu_co8426941.1_g000001 Rmu_sc0023706.1_g000008
rosa_samantha	Rh3AG094400 Rh3AG094500 Rh3BG098200 Rh3CG098500 Rh3CG098600 Rh3DG099600
rosa_wichuraiana	Rw0G013800 Rw3G008120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	568
Acc36I	ACCTGC	1 cut(s)	568
AccB1I	GGYRCC	2 cut(s)	179, 556
AccII	CGCG	2 cut(s)	386, 405
AciI	CCGC	3 cut(s)	237, 403, 486
AclWI	GGATC	2 cut(s)	566, 579
AdeI	CACNNNGTG	1 cut(s)	322
AfaI	GTAC	2 cut(s)	484, 551
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	5 cut(s)	19, 25, 50, 412, 583
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw21I	GWGCWC	2 cut(s)	124, 210
Alw26I	GTCTC	2 cut(s)	59, 66
AlwI	GGATC	2 cut(s)	566, 579
AoxI	GGCC	3 cut(s)	168, 248, 474
ApaI	GGGCCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	248, 249
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	2 cut(s)	179, 556
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	124, 210
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	2 cut(s)	459, 570
BciT130I	CCWGG	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	59, 66
BfaI	CTAG	3 cut(s)	69, 540, 593
BfuAI	ACCTGC	1 cut(s)	568
BisI	GCNGC	2 cut(s)	238, 362
BlsI	GCNGC	2 cut(s)	239, 363
Bme1390I	CCNGG	2 cut(s)	509, 576
BmgT120I	GGNCC	2 cut(s)	248, 249
BmiI	GGNNCC	5 cut(s)	181, 250, 501, 558, 573
BmrFI	CCNGG	2 cut(s)	509, 576
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	386
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	115, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	115, 175
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	156, 205
BseNI	ACTGG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	348
Bsh1236I	CGCG	2 cut(s)	386, 405
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	3 cut(s)	170, 250, 476
BshNI	GGYRCC	2 cut(s)	179, 556
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	124, 210
BsiSI	CCGG	4 cut(s)	203, 497, 509, 527
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	59, 66
BsmBI	CGTCTC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	170, 250, 476
Bsp120I	GGGCCC	1 cut(s)	248
Bsp1286I	GDGCHC	3 cut(s)	124, 210, 252
Bsp143I	GATC	2 cut(s)	101, 571
BspACI	CCGC	3 cut(s)	237, 403, 486
BspANI	GGCC	3 cut(s)	170, 250, 476
BspCNI	CTCAG	2 cut(s)	157, 204
BspFNI	CGCG	2 cut(s)	386, 405
BspLI	GGNNCC	5 cut(s)	181, 250, 501, 558, 573
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	566, 579
BspT107I	GGYRCC	2 cut(s)	179, 556
BsrDI	GCAATG	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	115, 175
BssMI	GATC	2 cut(s)	101, 571
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	354, 474
BstDEI	CTNAG	2 cut(s)	165, 191
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	2 cut(s)	386, 405
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	104, 574
BstMAI	GTCTC	2 cut(s)	59, 66
BstMBI	GATC	2 cut(s)	101, 571
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	2 cut(s)	507, 574
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	2 cut(s)	386, 405
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	170, 250, 476
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	354, 474
CfoI	GCGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	2 cut(s)	248, 249
Csp6I	GTAC	2 cut(s)	483, 550
CviAII	CATG	5 cut(s)	161, 328, 349, 389, 546
CviQI	GTAC	2 cut(s)	483, 550
DdeI	CTNAG	2 cut(s)	165, 191
DpnI	GATC	2 cut(s)	103, 573
DpnII	GATC	2 cut(s)	101, 571
DraIII	CACNNNGTG	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	574
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	5 cut(s)	164, 331, 352, 392, 549
FaiI	YATR	8 cut(s)	162, 188, 228, 290, 329, 350, 390, 547
FatI	CATG	5 cut(s)	160, 327, 348, 388, 545
Fnu4HI	GCNGC	2 cut(s)	238, 362
FokI	GGATG	1 cut(s)	297
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	238, 362
FspBI	CTAG	3 cut(s)	69, 540, 593
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	238, 362
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	170, 250, 476
HapII	CCGG	4 cut(s)	203, 497, 509, 527
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	5 cut(s)	164, 331, 352, 392, 549
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	4 cut(s)	15, 30, 93, 579
HpaII	CCGG	4 cut(s)	203, 497, 509, 527
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	325, 400, 552
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	6 cut(s)	34, 56, 88, 97, 105, 317
Hpy8I	GTNNAC	3 cut(s)	325, 400, 552
HpyAV	CCTTC	1 cut(s)	34
HpyCH4IV	ACGT	4 cut(s)	75, 216, 423, 481
HpyCH4V	TGCA	2 cut(s)	537, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	2 cut(s)	165, 191
HpySE526I	ACGT	4 cut(s)	75, 216, 423, 481
Hsp92II	CATG	5 cut(s)	164, 331, 352, 392, 549
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	101, 571
LmnI	GCTCC	3 cut(s)	119, 205, 505
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	3 cut(s)	69, 540, 593
MaeII	ACGT	4 cut(s)	75, 216, 423, 481
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	103, 573
MboI	GATC	2 cut(s)	101, 571
MboII	GAAGA	5 cut(s)	49, 140, 143, 466, 524
MfeI	CAATTG	1 cut(s)	583
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	3 cut(s)	124, 210, 252
MluCI	AATT	3 cut(s)	19, 272, 583
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	160, 181, 235, 324, 361, 455
MroXI	GAANNNNTTC	1 cut(s)	290
MslI	CAYNNNNRTG	2 cut(s)	347, 387
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	4 cut(s)	203, 497, 509, 527
MspR9I	CCNGG	2 cut(s)	509, 576
MunI	CAATTG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	2 cut(s)	386, 405
MwoI	GCNNNNNNNGC	1 cut(s)	358
NciI	CCSGG	1 cut(s)	509
NdeII	GATC	2 cut(s)	101, 571
NlaIII	CATG	5 cut(s)	164, 331, 352, 392, 549
NlaIV	GGNNCC	5 cut(s)	181, 250, 501, 558, 573
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	568
PceI	AGGCCT	1 cut(s)	170
PciI	ACATGT	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	3 cut(s)	15, 30, 579
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	2 cut(s)	239, 363
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PscI	ACATGT	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	5 cut(s)	181, 250, 501, 558, 573
PspOMI	GGGCCC	1 cut(s)	248
PspPI	GGNCC	2 cut(s)	248, 249
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	2 cut(s)	484, 551
RsaNI	GTAC	2 cut(s)	483, 550
RseI	CAYNNNNRTG	2 cut(s)	347, 387
SatI	GCNGC	2 cut(s)	238, 362
Sau3AI	GATC	2 cut(s)	101, 571
Sau96I	GGNCC	2 cut(s)	248, 249
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	509, 576
SduI	GDGCHC	3 cut(s)	124, 210, 252
SetI	ASST	9 cut(s)	55, 78, 154, 219, 246, 372, 426, 484, 562
SfaNI	GCATC	1 cut(s)	505
SgrAI	CRCCGGYG	1 cut(s)	526
SmiMI	CAYNNNNRTG	2 cut(s)	347, 387
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	3 cut(s)	19, 272, 583
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	3 cut(s)	237, 403, 486
SspMI	CTAG	3 cut(s)	69, 540, 593
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	507, 574
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	4 cut(s)	78, 219, 426, 484
TaqI	TCGA	5 cut(s)	13, 28, 57, 294, 332
TasI	AATT	3 cut(s)	19, 272, 583
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	3 cut(s)	15, 30, 579
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	289
TspGWI	ACGGA	1 cut(s)	321
XceI	RCATGY	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	3 cut(s)	69, 540, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.