Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023706.1

Orthogroup ID

OG0016409

Physical Location & Seq

Genomic Coordinates Reverse (-)

35321 .. 35632

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023706.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgttcgatttcatctacggacatcctcacgaagtgaacatgtcgattattcacatcatcatgcgtgctttgctgctggaggtggaacatctccacgcgcatggagtagtccaccgcgatttgaagcctacaaacgtgcttatcaatcaagtcacggctgatgtgaagataggaggctttgagcaggccagacgtaccgctggttttccggctccccacccggaagatgcttactcaccggtgcgttgcactagcacatggtacacgacacctgcaatggcggatccaggattcaattgttgtctaggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

103

Amino Acids

11.49

Weight (kDa)

6.2

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016409)

Species	Orthologous Gene IDs
malus_domestica	MD04G1180000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0459641 RchiOBHm_Chr3g0459651
rosa_laevigata	RLG00000025081 RLG00000025082
rosa_multiflora	Rmu_co8426941.1_g000001 Rmu_sc0023706.1_g000008
rosa_samantha	Rh3AG094400 Rh3AG094500 Rh3BG098200 Rh3CG098500 Rh3CG098600 Rh3DG099600
rosa_wichuraiana	Rw0G013800 Rw3G008120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	1 cut(s)	280
AccII	CGCG	2 cut(s)	98, 117
AciI	CCGC	3 cut(s)	115, 198, 281
AclWI	GGATC	2 cut(s)	278, 291
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	2 cut(s)	196, 263
AflIII	ACRYGT	1 cut(s)	39
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	124, 295
AjnI	CCWGG	1 cut(s)	286
AlwI	GGATC	2 cut(s)	278, 291
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	73
AsiGI	ACCGGT	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	60
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	221
BfaI	CTAG	2 cut(s)	252, 305
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	221, 288
BmiI	GGNNCC	2 cut(s)	213, 285
BmrFI	CCNGG	2 cut(s)	221, 288
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	60
Bsh1236I	CGCG	2 cut(s)	98, 117
BshFI	GGCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	238
BsiSI	CCGG	3 cut(s)	209, 221, 239
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	3 cut(s)	115, 198, 281
BspANI	GGCC	1 cut(s)	188
BspFNI	CGCG	2 cut(s)	98, 117
BspLI	GGNNCC	2 cut(s)	213, 285
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	2 cut(s)	278, 291
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssMI	GATC	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	66, 186
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	2 cut(s)	98, 117
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	219, 286
BstUI	CGCG	2 cut(s)	98, 117
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	66, 186
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	195, 262
CspAI	ACCGGT	1 cut(s)	238
CviAII	CATG	4 cut(s)	40, 61, 101, 258
CviJI	RGCY	6 cut(s)	127, 158, 177, 188, 212, 309
CviKI_1	RGCY	6 cut(s)	127, 158, 177, 188, 212, 309
CviQI	GTAC	2 cut(s)	195, 262
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
DraIII	CACNNNGTG	1 cut(s)	34
EciI	GGCGGA	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	286
FaeI	CATG	4 cut(s)	43, 64, 104, 261
FaiI	YATR	4 cut(s)	41, 62, 102, 259
FatI	CATG	4 cut(s)	39, 60, 100, 257
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	2 cut(s)	252, 305
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	3 cut(s)	209, 221, 239
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	43, 64, 104, 261
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	3 cut(s)	209, 221, 239
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	3 cut(s)	37, 112, 264
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	3 cut(s)	37, 112, 264
HpyCH4IV	ACGT	2 cut(s)	135, 193
HpyCH4V	TGCA	2 cut(s)	249, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpySE526I	ACGT	2 cut(s)	135, 193
Hsp92II	CATG	4 cut(s)	43, 64, 104, 261
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	252, 305
MaeII	ACGT	2 cut(s)	135, 193
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	178, 236
MfeI	CAATTG	1 cut(s)	295
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	1 cut(s)	295
MnlI	CCTC	3 cut(s)	36, 73, 167
MslI	CAYNNNNRTG	2 cut(s)	59, 99
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	3 cut(s)	209, 221, 239
MspR9I	CCNGG	2 cut(s)	221, 288
MunI	CAATTG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	2 cut(s)	98, 117
MwoI	GCNNNNNNNGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	4 cut(s)	43, 64, 104, 261
NlaIV	GGNNCC	2 cut(s)	213, 285
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	280
PciI	ACATGT	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	291
PfoI	TCCNGGA	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	75
PscI	ACATGT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	213, 285
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	2 cut(s)	196, 263
RsaNI	GTAC	2 cut(s)	195, 262
RseI	CAYNNNNRTG	2 cut(s)	59, 99
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	221, 288
SetI	ASST	4 cut(s)	84, 138, 196, 274
SfaNI	GCATC	1 cut(s)	217
SgrAI	CRCCGGYG	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	59, 99
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	3 cut(s)	115, 198, 281
SspMI	CTAG	2 cut(s)	252, 305
StyD4I	CCNGG	2 cut(s)	219, 286
TaiI	ACGT	2 cut(s)	138, 196
TaqI	TCGA	2 cut(s)	6, 44
TasI	AATT	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	151
TspGWI	ACGGA	1 cut(s)	33
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	2 cut(s)	252, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.