Rh3AG094400

Cell division control protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016409
Physical Location & Seq
Forward (+)
7709908 .. 7739186
29279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG094400.1

Sequence Viewer

Length: 744 bp
ATGGTCCAGAGCTTTCTGTTTCAGCTCTGTAAAGGAGTGGCGCATTGCCACTCCCACGGCTTGCTTCACCATGCTTTGAAGCTGCAGAATCTGCTTCTAGATAAGGATAGAGGGGTTCTCAAGATCGCCGATTTTGGATTGGGCCTAGCGTTCACTGTGCCTCTCAAGAGTTGTACGCATGAGATTGTGACTCTCTGGTATAGAGCACCGGAGGTTCTGCTCGGGTCTACTCACTACTCCACCGGCGTTGATATGTGGTCGGTCGGATGCATATTCGGTCAGAGAGTCGTGAGGTCGATATTGAGGCAAGAAGCGGAAGAAGCTGAAGAAGCACATTTGACCCATGCTGAGGCCTCCCGTGGTGCCACTGTTCTCAGAACCTTGCCGGAGCACAACAACGTGATATCCTTGGTTGCGAGCGGCGATGTAGGTCCTGATTTCTATTGGGTTGTCGATTTCTTCGACGTGGATCTGTGCAGTTTGATCTACGAACCTGGTGGTCACCACGTTAACATGCCGCGTATTCGCTTCATCATGCGTGCTTTGCTGCTGGGGGTGGATCATCTCCATAGGCATGGAGTAGTCCACCGCGATTTGGAGCCTATGAACGTGTTTGTGAATCGGGCCACGGCTCAGGTGAAGATCGGAGGCTTTGAGCGGGCCAGACGTACCGCCGTTCCACCAGCCCCCCCTCCCGGAAGACGGTTACTCGCGACGCACCAGCACATGGTACATGGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

247

Amino Acids

27.55

Weight (kDa)

7.84

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 109 4.6e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 90 4.9e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 110 - 224 3.5e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 114 - 221 4.6e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 362, 737
AccB7I CCANNNNNTGG 1 cut(s) 727
AccBSI CCGCTC 2 cut(s) 420, 658
AccI GTMKAC 1 cut(s) 227
AccII CGCG 3 cut(s) 520, 591, 713
AciI CCGC 6 cut(s) 314, 420, 518, 589, 658, 672
AclWI GGATC 2 cut(s) 477, 567
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 3 cut(s) 175, 670, 732
AfiI CCNNNNNNNGG 5 cut(s) 349, 595, 695, 702, 727
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 1 cut(s) 79
AjiI CACGTC 1 cut(s) 466
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 4 cut(s) 12, 25, 82, 323
AluI AGCT 4 cut(s) 12, 25, 82, 323
Alw21I GWGCWC 2 cut(s) 208, 393
AlwI GGATC 2 cut(s) 477, 567
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 4 cut(s) 142, 351, 624, 660
ApeKI GCWGC 2 cut(s) 82, 547
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 5 cut(s) 4, 142, 431, 624, 660
AsuC2I CCSGG 1 cut(s) 696
AsuHPI GGTGA 3 cut(s) 59, 494, 649
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 4, 431
BanI GGYRCC 2 cut(s) 362, 737
BbsI GAAGAC 1 cut(s) 706
Bbv12I GWGCWC 2 cut(s) 208, 393
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 69, 534
BceAI ACGGC 3 cut(s) 73, 645, 659
BciT130I CCWGG 1 cut(s) 495
BcnI CCSGG 1 cut(s) 696
BfaI CTAG 2 cut(s) 98, 146
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 4 cut(s) 83, 421, 518, 548
BlsI GCNGC 4 cut(s) 84, 422, 519, 549
Bme1390I CCNGG 2 cut(s) 495, 696
Bme18I GGWCC 2 cut(s) 4, 431
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 5 cut(s) 4, 142, 431, 624, 660
BmiI GGNNCC 3 cut(s) 364, 600, 739
BmrFI CCNGG 2 cut(s) 495, 696
BmsI GCATC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 706
BplI GAGNNNNNCTC 2 cut(s) 102, 134
Bpu10I CCTNAGC 2 cut(s) 348, 633
BpuEI CTTGAG 2 cut(s) 104, 149
BpuMI CCSGG 1 cut(s) 696
BsaJI CCNNGG 4 cut(s) 55, 358, 408, 627
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 5 cut(s) 349, 595, 695, 702, 727
Bse118I RCCGGY 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 4 cut(s) 55, 358, 408, 627
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 5 cut(s) 349, 595, 695, 702, 727
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 3 cut(s) 339, 388, 647
BseXI GCAGC 2 cut(s) 69, 534
BseYI CCCAGC 1 cut(s) 550
BsgI GTGCAG 1 cut(s) 496
Bsh1236I CGCG 3 cut(s) 520, 591, 713
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 4 cut(s) 144, 353, 626, 662
BshNI GGYRCC 2 cut(s) 362, 737
BsiEI CGRYCG 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 208, 393
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 4 cut(s) 209, 243, 386, 696
BslI CCNNNNNNNGG 5 cut(s) 349, 595, 695, 702, 727
BsnI GGCC 4 cut(s) 144, 353, 626, 662
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 208, 393
Bsp143I GATC 5 cut(s) 123, 469, 483, 559, 642
Bsp68I TCGCGA 1 cut(s) 713
BspACI CCGC 6 cut(s) 314, 420, 518, 589, 658, 672
BspANI GGCC 4 cut(s) 144, 353, 626, 662
BspCNI CTCAG 3 cut(s) 340, 387, 646
BspFNI CGCG 3 cut(s) 520, 591, 713
BspLI GGNNCC 3 cut(s) 364, 600, 739
BspMAI CTGCAG 1 cut(s) 87
BspPI GGATC 2 cut(s) 477, 567
BspT107I GGYRCC 2 cut(s) 362, 737
BsrBI CCGCTC 2 cut(s) 420, 658
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 4 cut(s) 55, 358, 408, 627
BssMI GATC 5 cut(s) 123, 469, 483, 559, 642
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 3 cut(s) 157, 370, 705
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 4 cut(s) 62, 418, 540, 660
BstDEI CTNAG 3 cut(s) 348, 374, 633
BstDSI CCRYGG 3 cut(s) 55, 358, 627
BstEII GGTNACC 1 cut(s) 500
BstF5I GGATG 1 cut(s) 272
BstFNI CGCG 3 cut(s) 520, 591, 713
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 5 cut(s) 126, 472, 486, 562, 645
BstMBI GATC 5 cut(s) 123, 469, 483, 559, 642
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 4 cut(s) 91, 320, 329, 544
BstNI CCWGG 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 517
BstPI GGTNACC 1 cut(s) 500
BstSCI CCNGG 2 cut(s) 493, 694
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 3 cut(s) 520, 591, 713
BstV1I GCAGC 2 cut(s) 69, 534
BstV2I GAAGAC 1 cut(s) 706
BstX2I RGATCY 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 575
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 4 cut(s) 144, 353, 626, 662
BtgI CCRYGG 3 cut(s) 55, 358, 627
BtgZI GCGATG 1 cut(s) 438
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 1 cut(s) 272
BtsIMutI CAGTG 2 cut(s) 153, 366
BtuMI TCGCGA 1 cut(s) 713
Cac8I GCNNGC 4 cut(s) 62, 418, 540, 660
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 5 cut(s) 4, 142, 431, 624, 660
CseI GACGC 1 cut(s) 724
CsiI ACCWGGT 1 cut(s) 493
Csp6I GTAC 3 cut(s) 174, 669, 731
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 8 cut(s) 71, 179, 344, 514, 535, 575, 727, 734
CviQI GTAC 3 cut(s) 174, 669, 731
DdeI CTNAG 3 cut(s) 348, 374, 633
DpnI GATC 5 cut(s) 125, 471, 485, 561, 644
DpnII GATC 5 cut(s) 123, 469, 483, 559, 642
Eco130I CCWWGG 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 353
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 4, 431
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 500
EcoO109I RGGNCCY 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 493
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 8 cut(s) 74, 182, 347, 517, 538, 578, 730, 737
FatI CATG 8 cut(s) 70, 178, 343, 513, 534, 574, 726, 733
FauI CCCGC 1 cut(s) 651
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 4 cut(s) 83, 421, 518, 548
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 4 cut(s) 83, 421, 518, 548
FspBI CTAG 2 cut(s) 98, 146
GlaI GCGC 1 cut(s) 42
GluI GCNGC 4 cut(s) 83, 421, 518, 548
GsaI CCCAGC 1 cut(s) 554
HaeIII GGCC 4 cut(s) 144, 353, 626, 662
HapII CCGG 4 cut(s) 209, 243, 386, 696
HgaI GACGC 1 cut(s) 724
HhaI GCGC 1 cut(s) 43
Hin1II CATG 8 cut(s) 74, 182, 347, 517, 538, 578, 730, 737
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 4 cut(s) 88, 190, 285, 619
HpaI GTTAAC 1 cut(s) 511
HpaII CCGG 4 cut(s) 209, 243, 386, 696
HphI GGTGA 3 cut(s) 59, 494, 649
Hpy166II GTNNAC 4 cut(s) 153, 228, 511, 586
Hpy188I TCNGA 4 cut(s) 266, 282, 377, 647
Hpy188III TCNNGA 7 cut(s) 7, 98, 121, 166, 289, 434, 712
Hpy8I GTNNAC 4 cut(s) 153, 228, 511, 586
Hpy99I CGWCG 2 cut(s) 467, 718
HpyCH4III ACNGT 3 cut(s) 157, 370, 705
HpyCH4IV ACGT 5 cut(s) 399, 465, 507, 609, 667
HpyCH4V TGCA 3 cut(s) 85, 270, 477
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 320, 329, 544
HpyF3I CTNAG 3 cut(s) 348, 374, 633
HpySE526I ACGT 5 cut(s) 399, 465, 507, 609, 667
Hsp92II CATG 8 cut(s) 74, 182, 347, 517, 538, 578, 730, 737
HspAI GCGC 1 cut(s) 41
KspAI GTTAAC 1 cut(s) 511
Kzo9I GATC 5 cut(s) 123, 469, 483, 559, 642
LmnI GCTCC 2 cut(s) 388, 598
Lsp1109I GCAGC 2 cut(s) 69, 534
LweI GCATC 1 cut(s) 257
MabI ACCWGGT 1 cut(s) 493
MaeI CTAG 2 cut(s) 98, 146
MaeII ACGT 5 cut(s) 399, 465, 507, 609, 667
MaeIII GTNAC 3 cut(s) 187, 500, 705
MalI GATC 5 cut(s) 125, 471, 485, 561, 644
MbiI CCGCTC 2 cut(s) 420, 658
MboI GATC 5 cut(s) 123, 469, 483, 559, 642
MboII GAAGA 5 cut(s) 329, 338, 451, 652, 711
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 208, 393
MlyI GAGTC 2 cut(s) 184, 294
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 9 cut(s) 104, 171, 205, 285, 297, 343, 364, 641, 702
Mph1103I ATGCAT 1 cut(s) 272
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 573
MspI CCGG 4 cut(s) 209, 243, 386, 696
MspR9I CCNGG 2 cut(s) 495, 696
MvaI CCWGG 1 cut(s) 495
MvnI CGCG 3 cut(s) 520, 591, 713
MwoI GCNNNNNNNGC 4 cut(s) 91, 320, 329, 544
NciI CCSGG 1 cut(s) 696
NdeII GATC 5 cut(s) 123, 469, 483, 559, 642
NlaIII CATG 8 cut(s) 74, 182, 347, 517, 538, 578, 730, 737
NlaIV GGNNCC 3 cut(s) 364, 600, 739
NmuCI GTSAC 2 cut(s) 187, 500
NruI TCGCGA 1 cut(s) 713
NsiI ATGCAT 1 cut(s) 272
NspI RCATGY 1 cut(s) 517
PceI AGGCCT 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 2 cut(s) 88, 619
PflMI CCANNNNNTGG 1 cut(s) 727
PfoI TCCNGGA 1 cut(s) 694
PkrI GCNGC 4 cut(s) 84, 422, 519, 549
PleI GAGTC 2 cut(s) 184, 293
PpsI GAGTC 2 cut(s) 184, 293
PpuMI RGGWCCY 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 493
PspEI GGTNACC 1 cut(s) 500
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 3 cut(s) 364, 600, 739
PspPI GGNCC 5 cut(s) 4, 142, 431, 624, 660
PspPPI RGGWCCY 1 cut(s) 431
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 469
RruI TCGCGA 1 cut(s) 713
RsaI GTAC 3 cut(s) 175, 670, 732
RsaNI GTAC 3 cut(s) 174, 669, 731
RseI CAYNNNNRTG 1 cut(s) 573
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 4 cut(s) 83, 421, 518, 548
Sau3AI GATC 5 cut(s) 123, 469, 483, 559, 642
Sau96I GGNCC 5 cut(s) 4, 142, 431, 624, 660
SchI GAGTC 2 cut(s) 184, 294
ScrFI CCNGG 2 cut(s) 495, 696
SduI GDGCHC 2 cut(s) 208, 393
SexAI ACCWGGT 1 cut(s) 493
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 83
SgrAI CRCCGGYG 1 cut(s) 242
SinI GGWCC 2 cut(s) 4, 431
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 119, 164
SmoI CTYRAG 2 cut(s) 119, 164
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 6 cut(s) 314, 420, 518, 589, 658, 672
SspMI CTAG 2 cut(s) 98, 146
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 493, 694
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 3 cut(s) 157, 370, 705
TaiI ACGT 5 cut(s) 402, 468, 510, 612, 670
TaqI TCGA 3 cut(s) 296, 453, 462
TaqII GACCGA 2 cut(s) 250, 266
TauI GCSGC 2 cut(s) 423, 520
TfiI GAWTC 2 cut(s) 88, 619
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 2 cut(s) 160, 373
TseFI GTSAC 2 cut(s) 187, 500
TseI GCWGC 2 cut(s) 82, 547
Tsp45I GTSAC 2 cut(s) 187, 500
TspDTI ATGAA 2 cut(s) 520, 620
TspRI CASTG 2 cut(s) 160, 373
Van91I CCANNNNNTGG 1 cut(s) 727
VpaK11BI GGWCC 2 cut(s) 4, 431
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 227
XspI CTAG 2 cut(s) 98, 146
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.