Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00621

Orthogroup ID

OG0016409

Physical Location & Seq

Genomic Coordinates Forward (+)

35905 .. 39389

Gene Structure 3485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTGAGACTAGAGACGTTGTATTCGAGAGTCGTGAGATCAAGATTGAGCCAAGGAGCACAAGAGGCAGAAGAAGAAGAAGAAGAAGCACCTTTGACCCATGCTGAGGCCTCCCGTGGTGCCACCGTACTCAGAGCCTTGCCGGAGCACGACAACGTGATATCCTATATCACGAGCGGCGAGGTAGGGCCTGATTTTTACTGGGTGGTGGAATTATTTGATGAGAATCTGTTCGATTTCATCTACGGACATCCTCACGAAGTGAACATGTCGATTATTCACATCATCATGCATGCTTTGCTGCTGGAGGTGGAACATCTCCACGCGCATGGAGTAGTCCACTGCGATTTGAAGCCTACAAACGTGCTTATCAATCAAGTCACGACTGATGTGAAGATAGGAGGCTTTGAGCAGGCCAGACGTACCGCTGGTTTTCGGGATTCCCACCCAGAAGATGCTTACTCGCCGGGCGGTGAAATGGTGCTGAATTATTTAATAAACTTGCAGCTGAAATGGTTTTGCGTGGACCCATCTTTAGTGGCAATTCAGAGGCTAACCAGCTCTTCATTATCTTCAGGTATTAAGGGTGTGGGTCTTAGTCCTACTATTTGCTTTATGTTATCTGTTAATAGTGAGCTAGGAGCTCCCCCCAAGGAAGAGTTGGCTGGCCTGCCTGTGTTACCTGAATGGCATCGACCATACCCTGCACGGAACTTGGGGAATCTCGTCCCACCAGAAGTTTTGCCACTGCTCTTGAGAATGCTCAGCATCAATCCAGCTAACAGGATTTCTGCTCAAGAGTGCCTGGATGATCTGTTCTTTTTCCCACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

278

Amino Acids

31.02

Weight (kDa)

5.0

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 142	5.1e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	34 - 142	9.2e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016409)

Species	Orthologous Gene IDs
malus_domestica	MD04G1180000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0459641 RchiOBHm_Chr3g0459651
rosa_laevigata	RLG00000025081 RLG00000025082
rosa_multiflora	Rmu_co8426941.1_g000001 Rmu_sc0023706.1_g000008
rosa_samantha	Rh3AG094400 Rh3AG094500 Rh3BG098200 Rh3CG098500 Rh3CG098600 Rh3DG099600
rosa_wichuraiana	Rw0G013800 Rw3G008120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccBSI	CCGCTC	1 cut(s)	177
AccII	CGCG	1 cut(s)	326
AciI	CCGC	3 cut(s)	177, 426, 471
AcuI	CTGAAG	1 cut(s)	558
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	129, 424
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	804
AloI	GAACNNNNNNTCC	2 cut(s)	800, 832
AluBI	AGCT	5 cut(s)	508, 561, 637, 644, 779
AluI	AGCT	5 cut(s)	508, 561, 637, 644, 779
Alw21I	GWGCWC	3 cut(s)	61, 150, 646
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	4 cut(s)	108, 188, 414, 667
ApeKI	GCWGC	2 cut(s)	301, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	188, 526
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	16, 485
AvaII	GGWCC	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	646
BauI	CACGAG	1 cut(s)	172
Bbv12I	GWGCWC	3 cut(s)	61, 150, 646
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	288, 517
BccI	CCATC	1 cut(s)	538
BciT130I	CCWGG	1 cut(s)	806
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	2 cut(s)	11, 638
BisI	GCNGC	3 cut(s)	178, 302, 506
BlpI	GCTNAGC	1 cut(s)	764
BlsI	GCNGC	3 cut(s)	179, 303, 507
Bme1390I	CCNGG	2 cut(s)	468, 806
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	2 cut(s)	188, 526
BmiI	GGNNCC	2 cut(s)	121, 528
BmrFI	CCNGG	2 cut(s)	468, 806
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	3 cut(s)	445, 700, 777
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	2 cut(s)	775, 780
BpuMI	CCSGG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	52, 115, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	3 cut(s)	52, 115, 651
BseGI	GGATG	2 cut(s)	250, 814
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	96, 145, 778
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	288, 517
BsgI	GTGCAG	1 cut(s)	690
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	4 cut(s)	110, 190, 416, 669
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	3 cut(s)	61, 150, 646
BsiSI	CCGG	2 cut(s)	143, 467
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	8
BsmBI	CGTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	713
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	4 cut(s)	110, 190, 416, 669
Bsp1286I	GDGCHC	3 cut(s)	61, 150, 646
Bsp143I	GATC	2 cut(s)	38, 811
Bsp1720I	GCTNAGC	1 cut(s)	764
BspACI	CCGC	3 cut(s)	177, 426, 471
BspANI	GGCC	4 cut(s)	110, 190, 416, 669
BspCNI	CTCAG	3 cut(s)	97, 144, 777
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	121, 528
BspQI	GCTCTTC	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	52, 115, 651
BssMI	GATC	2 cut(s)	38, 811
BssSI	CACGAG	1 cut(s)	172
BssT1I	CCWWGG	2 cut(s)	52, 651
Bst2BI	CACGAG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	568, 651
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	4 cut(s)	294, 414, 667, 671
BstDEI	CTNAG	4 cut(s)	105, 131, 596, 764
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	250, 814
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	2 cut(s)	41, 814
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	38, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 298
BstNI	CCWGG	1 cut(s)	806
BstNSI	RCATGY	2 cut(s)	271, 296
BstSCI	CCNGG	2 cut(s)	466, 804
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	288, 517
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	110, 190, 416, 669
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	250, 814
BtsI	GCAGTG	2 cut(s)	340, 746
BtsIMutI	CAGTG	2 cut(s)	340, 746
Cac8I	GCNNGC	4 cut(s)	294, 414, 667, 671
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	188, 526
Csp6I	GTAC	2 cut(s)	128, 423
CspCI	CAANNNNNGTGG	2 cut(s)	735, 770
CviAII	CATG	5 cut(s)	101, 268, 289, 293, 329
CviQI	GTAC	2 cut(s)	128, 423
DdeI	CTNAG	4 cut(s)	105, 131, 596, 764
DpnI	GATC	2 cut(s)	40, 813
DpnII	GATC	2 cut(s)	38, 811
DraIII	CACNNNGTG	1 cut(s)	262
Eam1104I	CTCTTC	2 cut(s)	568, 651
EarI	CTCTTC	2 cut(s)	568, 651
Ecl136II	GAGCTC	1 cut(s)	644
Eco130I	CCWWGG	2 cut(s)	52, 651
Eco147I	AGGCCT	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	526
Eco53kI	GAGCTC	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	804
EcoRV	GATATC	1 cut(s)	162
EcoT14I	CCWWGG	2 cut(s)	52, 651
EcoT22I	ATGCAT	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	646
ErhI	CCWWGG	2 cut(s)	52, 651
Esp3I	CGTCTC	1 cut(s)	8
FaeI	CATG	5 cut(s)	104, 271, 292, 296, 332
FaiI	YATR	8 cut(s)	102, 168, 269, 290, 294, 330, 617, 700
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	5 cut(s)	100, 267, 288, 292, 328
Fnu4HI	GCNGC	3 cut(s)	178, 302, 506
FokI	GGATG	2 cut(s)	237, 821
FriOI	GRGCYC	1 cut(s)	646
Fsp4HI	GCNGC	3 cut(s)	178, 302, 506
FspBI	CTAG	2 cut(s)	11, 638
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	3 cut(s)	178, 302, 506
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	4 cut(s)	110, 190, 416, 669
HapII	CCGG	2 cut(s)	143, 467
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	5 cut(s)	104, 271, 292, 296, 332
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	4 cut(s)	30, 226, 440, 721
HpaII	CCGG	2 cut(s)	143, 467
HphI	GGTGA	2 cut(s)	16, 485
Hpy166II	GTNNAC	3 cut(s)	265, 340, 526
Hpy188I	TCNGA	2 cut(s)	134, 549
Hpy188III	TCNNGA	9 cut(s)	27, 34, 42, 172, 257, 382, 437, 754, 797
Hpy8I	GTNNAC	3 cut(s)	265, 340, 526
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	4 cut(s)	17, 156, 363, 421
HpyCH4V	TGCA	3 cut(s)	292, 505, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 298
HpyF3I	CTNAG	4 cut(s)	105, 131, 596, 764
HpySE526I	ACGT	4 cut(s)	17, 156, 363, 421
Hsp92II	CATG	5 cut(s)	104, 271, 292, 296, 332
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	38, 811
LguI	GCTCTTC	1 cut(s)	568
LmnI	GCTCC	4 cut(s)	56, 145, 641, 649
Lsp1109I	GCAGC	2 cut(s)	288, 517
LweI	GCATC	3 cut(s)	445, 700, 777
MaeI	CTAG	2 cut(s)	11, 638
MaeII	ACGT	4 cut(s)	17, 156, 363, 421
MaeIII	GTNAC	2 cut(s)	379, 678
MalI	GATC	2 cut(s)	40, 813
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	2 cut(s)	38, 811
MhlI	GDGCHC	3 cut(s)	61, 150, 646
MluCI	AATT	3 cut(s)	212, 487, 543
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	8 cut(s)	58, 100, 121, 175, 264, 301, 395, 543
Mph1103I	ATGCAT	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	3 cut(s)	494, 582, 627
MslI	CAYNNNNRTG	2 cut(s)	287, 327
MspA1I	CMGCKG	2 cut(s)	428, 508
MspI	CCGG	2 cut(s)	143, 467
MspR9I	CCNGG	2 cut(s)	468, 806
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	806
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	65, 298
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	38, 811
NlaIII	CATG	5 cut(s)	104, 271, 292, 296, 332
NlaIV	GGNNCC	2 cut(s)	121, 528
NmuCI	GTSAC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	2 cut(s)	271, 296
PaeI	GCATGC	1 cut(s)	296
PceI	AGGCCT	1 cut(s)	110
PciI	ACATGT	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	226, 440, 721
PkrI	GCNGC	3 cut(s)	179, 303, 507
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PscI	ACATGT	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	646
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	2 cut(s)	121, 528
PspPI	GGNCC	2 cut(s)	188, 526
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	2 cut(s)	129, 424
RsaNI	GTAC	2 cut(s)	128, 423
RseI	CAYNNNNRTG	2 cut(s)	287, 327
SacI	GAGCTC	1 cut(s)	646
SapI	GCTCTTC	1 cut(s)	568
SaqAI	TTAA	3 cut(s)	494, 582, 627
SatI	GCNGC	3 cut(s)	178, 302, 506
Sau3AI	GATC	2 cut(s)	38, 811
Sau96I	GGNCC	2 cut(s)	188, 526
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	468, 806
SduI	GDGCHC	3 cut(s)	61, 150, 646
SfaNI	GCATC	3 cut(s)	445, 700, 777
SinI	GGWCC	1 cut(s)	526
SmiMI	CAYNNNNRTG	2 cut(s)	287, 327
SmlI	CTYRAG	2 cut(s)	754, 795
SmoI	CTYRAG	2 cut(s)	754, 795
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	3 cut(s)	212, 487, 543
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	3 cut(s)	177, 426, 471
SspMI	CTAG	2 cut(s)	11, 638
SstI	GAGCTC	1 cut(s)	646
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	466, 804
StyI	CCWWGG	2 cut(s)	52, 651
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	4 cut(s)	20, 159, 366, 424
TaqI	TCGA	4 cut(s)	26, 234, 272, 694
TasI	AATT	3 cut(s)	212, 487, 543
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	3 cut(s)	226, 440, 721
Tru1I	TTAA	3 cut(s)	494, 582, 627
Tru9I	TTAA	3 cut(s)	494, 582, 627
TscAI	CASTG	2 cut(s)	347, 753
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	301, 505
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	229, 555
TspGWI	ACGGA	2 cut(s)	261, 724
TspRI	CASTG	2 cut(s)	347, 753
VpaK11BI	GGWCC	1 cut(s)	526
XceI	RCATGY	2 cut(s)	271, 296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	2 cut(s)	11, 638
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.