Rw3G008120

Cell division control protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016409
Physical Location & Seq
Forward (+)
7539939 .. 7541294
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008120.1

Sequence Viewer

Length: 312 bp
ATGGTCCAGAGCTTTCTGTTTCAGCTCTGTAAAGGAGTGGCACACTGCCACTCCCACGGCGTGCTTCACCATATTTTGAAGCTGCAGAATCTGCTTCTGGATAAGGATAGAGGGGTTCTCAAGATCGCCGATTTTGGATTGGGCCTAGCGTTCACTGTGCCTCTCAAGAGCTCTACGCATGAGATTGTGACTCTCTGGTATAGAGCACCGGAGGTTCTGCTCGGGTCTACTCACTACTCCACCGGCGTTGATATGTGGTCGGTCGGATGCATATTCGGACTTGGCTTCGAGGACGATAATTGGTGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

103

Amino Acids

11.44

Weight (kDa)

6.34

Isoelectric Point (pI)

26.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 92 4.4e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 90 3.8e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 4 cut(s) 12, 25, 82, 171
AluI AGCT 4 cut(s) 12, 25, 82, 171
Alw21I GWGCWC 2 cut(s) 173, 208
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 4, 142
AsuHPI GGTGA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 2 cut(s) 173, 208
BbvI GCAGC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 73
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 4, 142
BmsI GCATC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 102, 134
BpuEI CTTGAG 2 cut(s) 104, 149
BsaJI CCNNGG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse118I RCCGGY 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 69
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 173, 208
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 2 cut(s) 209, 243
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 173, 208
Bsp143I GATC 1 cut(s) 123
BspANI GGCC 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 153
Cac8I GCNNGC 1 cut(s) 62
CaiI CAGNNNCTG 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 4, 142
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 1 cut(s) 179
CviJI RGCY 6 cut(s) 12, 25, 82, 144, 171, 285
CviKI_1 RGCY 6 cut(s) 12, 25, 82, 144, 171, 285
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DraIII CACNNNGTG 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 173
FaeI CATG 1 cut(s) 182
FaiI YATR 5 cut(s) 72, 180, 201, 254, 272
FatI CATG 1 cut(s) 178
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 1 cut(s) 279
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 146
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 144
HapII CCGG 2 cut(s) 209, 243
Hin1II CATG 1 cut(s) 182
HinfI GANTC 2 cut(s) 88, 190
HpaII CCGG 2 cut(s) 209, 243
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 153, 228
Hpy188I TCNGA 2 cut(s) 266, 278
Hpy188III TCNNGA 4 cut(s) 7, 98, 121, 166
Hpy8I GTNNAC 2 cut(s) 153, 228
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 85, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
Hsp92II CATG 1 cut(s) 182
Kzo9I GATC 1 cut(s) 123
LpnPI CCDG 5 cut(s) 20, 83, 181, 222, 256
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 173, 208
MluCI AATT 1 cut(s) 298
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 4 cut(s) 104, 171, 205, 283
Mph1103I ATGCAT 1 cut(s) 272
MspI CCGG 2 cut(s) 209, 243
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 272
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 173
PspPI GGNCC 2 cut(s) 4, 142
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 91
SacI GAGCTC 1 cut(s) 173
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 4, 142
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 2 cut(s) 173, 208
SetI ASST 5 cut(s) 14, 27, 84, 173, 216
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 83
SgrAI CRCCGGYG 1 cut(s) 242
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 2 cut(s) 119, 164
SmoI CTYRAG 2 cut(s) 119, 164
Sse9I AATT 1 cut(s) 298
SspMI CTAG 1 cut(s) 146
SstI GAGCTC 1 cut(s) 173
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 288
TaqII GACCGA 1 cut(s) 250
TasI AATT 1 cut(s) 298
TfiI GAWTC 1 cut(s) 88
TscAI CASTG 2 cut(s) 50, 160
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 187
TspRI CASTG 2 cut(s) 50, 160
VpaK11BI GGWCC 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 227
XspI CTAG 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.