Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016409

Physical Location & Seq

Genomic Coordinates Reverse (-)

7840756 .. 7844493

Gene Structure 3738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATTTCGGTCGATTCAATTTCAATCGAATCTGGAAGAAGGGGTTTGAAGCTCTAGATGGTGAGACTAGAGACGTTGTATTCGTCAGGAGAGTCGTGAGATCAAGATTGAGCCAAGGAGCACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGTAGAAGAAGAAGCACCTTTGACCCATGCTGAGGCCTCCCGTGGTGCCACCGTACTCAGAGCCTTGGCAGAGCACGACAACGTGATATCCTATATCACGAGCGGCAAGGTAAGGCCCGATTTTTACTGGGTGGTGGAATTATTTGATGAGAATATGTTCGATTTCATCTACGGACATCCTCACGAAGTTAACATGTCGATTATTCACATCATCATGCGTGCTTTGCTGCTGGAGGTGGAACATCTCCACGCGCATGAAGTAGTCCACCACGATTTGAAGCCTACAAACGTGCTTATCAATCAAGTCACGGCTGATGTGAAGATAGGAGGCTTTGAGCAGGCCAGACGTACCGCTGGTTTTCCGGCTCCCCACCCGGAAGATGCTTACTCGCCGGTGCGTTGCACTAGCACATGTGGCCATTCAGAGGCTAACCAGCTCTTCATTATCTTCAGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

224

Amino Acids

26.04

Weight (kDa)

4.52

Isoelectric Point (pI)

73.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 189	2.3e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	81 - 188	2.5e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016409)

Species	Orthologous Gene IDs
malus_domestica	MD04G1180000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0459641 RchiOBHm_Chr3g0459651
rosa_laevigata	RLG00000025081 RLG00000025082
rosa_multiflora	Rmu_co8426941.1_g000001 Rmu_sc0023706.1_g000008
rosa_samantha	Rh3AG094400 Rh3AG094500 Rh3BG098200 Rh3CG098500 Rh3CG098600 Rh3DG099600
rosa_wichuraiana	Rw0G013800 Rw3G008120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	318
AccII	CGCG	1 cut(s)	467
AciI	CCGC	2 cut(s)	318, 567
AcoI	YGGCCR	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	649
AfaI	GTAC	2 cut(s)	270, 565
AfiI	CCNNNNNNNGG	2 cut(s)	247, 640
AflIII	ACRYGT	2 cut(s)	408, 626
AgsI	TTSAA	4 cut(s)	19, 25, 50, 493
AluBI	AGCT	2 cut(s)	53, 652
AluI	AGCT	2 cut(s)	53, 652
Alw21I	GWGCWC	2 cut(s)	124, 291
Alw26I	GTCTC	2 cut(s)	59, 66
AoxI	GGCC	4 cut(s)	249, 329, 555, 631
ApeKI	GCWGC	1 cut(s)	442
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	330
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	313
Bbv12I	GWGCWC	2 cut(s)	124, 291
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	2 cut(s)	59, 66
BfaI	CTAG	3 cut(s)	56, 69, 621
BisI	GCNGC	2 cut(s)	319, 443
BlsI	GCNGC	2 cut(s)	320, 444
Bme1390I	CCNGG	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	2 cut(s)	262, 582
BmrFI	CCNGG	1 cut(s)	590
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	586
BmuI	ACTGGG	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	3 cut(s)	115, 256, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 640
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	115, 256, 279
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	247, 640
BseMII	CTCAG	2 cut(s)	237, 286
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	4 cut(s)	251, 331, 557, 633
BshNI	GGYRCC	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	124, 291
BsiSI	CCGG	3 cut(s)	578, 590, 608
BslI	CCNNNNNNNGG	2 cut(s)	247, 640
BsmAI	GTCTC	2 cut(s)	59, 66
BsmBI	CGTCTC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	251, 331, 557, 633
Bsp1286I	GDGCHC	2 cut(s)	124, 291
Bsp143I	GATC	1 cut(s)	101
BspACI	CCGC	2 cut(s)	318, 567
BspANI	GGCC	4 cut(s)	251, 331, 557, 633
BspCNI	CTCAG	2 cut(s)	238, 285
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	2 cut(s)	262, 582
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	3 cut(s)	115, 256, 279
BssMI	GATC	1 cut(s)	101
BssSI	CACGAG	1 cut(s)	313
BssT1I	CCWWGG	2 cut(s)	115, 279
Bst2BI	CACGAG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	435, 555
BstDEI	CTNAG	2 cut(s)	246, 272
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	2 cut(s)	59, 66
BstMBI	GATC	1 cut(s)	101
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 630
BstNSI	RCATGY	2 cut(s)	412, 630
BstSCI	CCNGG	1 cut(s)	588
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	429
BsuRI	GGCC	4 cut(s)	251, 331, 557, 633
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	435, 555
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	269, 564
CviAII	CATG	5 cut(s)	242, 409, 430, 470, 627
CviQI	GTAC	2 cut(s)	269, 564
DdeI	CTNAG	2 cut(s)	246, 272
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Eco130I	CCWWGG	2 cut(s)	115, 279
Eco147I	AGGCCT	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	649
EcoRV	GATATC	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	115, 279
ErhI	CCWWGG	2 cut(s)	115, 279
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	5 cut(s)	245, 412, 433, 473, 630
FaiI	YATR	7 cut(s)	243, 309, 371, 410, 431, 471, 628
FatI	CATG	5 cut(s)	241, 408, 429, 469, 626
Fnu4HI	GCNGC	2 cut(s)	319, 443
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	319, 443
FspBI	CTAG	3 cut(s)	56, 69, 621
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	2 cut(s)	319, 443
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	4 cut(s)	251, 331, 557, 633
HapII	CCGG	3 cut(s)	578, 590, 608
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	5 cut(s)	245, 412, 433, 473, 630
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	3 cut(s)	15, 30, 93
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	3 cut(s)	578, 590, 608
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	406, 481
Hpy188I	TCNGA	2 cut(s)	275, 640
Hpy188III	TCNNGA	7 cut(s)	34, 56, 88, 97, 105, 313, 398
Hpy8I	GTNNAC	2 cut(s)	406, 481
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	4 cut(s)	75, 297, 504, 562
HpyCH4V	TGCA	1 cut(s)	618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 630
HpyF3I	CTNAG	2 cut(s)	246, 272
HpySE526I	ACGT	4 cut(s)	75, 297, 504, 562
Hsp92II	CATG	5 cut(s)	245, 412, 433, 473, 630
HspAI	GCGC	1 cut(s)	467
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	101
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	2 cut(s)	119, 586
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	3 cut(s)	56, 69, 621
MaeII	ACGT	4 cut(s)	75, 297, 504, 562
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	1 cut(s)	103
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	1 cut(s)	101
MhlI	GDGCHC	2 cut(s)	124, 291
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	2 cut(s)	19, 353
MluNI	TGGCCA	1 cut(s)	633
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	241, 262, 405, 442, 536, 634
Mox20I	TGGCCA	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	2 cut(s)	405, 673
MslI	CAYNNNNRTG	2 cut(s)	428, 468
Msp20I	TGGCCA	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	3 cut(s)	578, 590, 608
MspR9I	CCNGG	1 cut(s)	590
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	439, 630
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	5 cut(s)	245, 412, 433, 473, 630
NlaIV	GGNNCC	2 cut(s)	262, 582
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	2 cut(s)	412, 630
PceI	AGGCCT	1 cut(s)	251
PciI	ACATGT	2 cut(s)	408, 626
PciSI	GCTCTTC	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	15, 30
PkrI	GCNGC	2 cut(s)	320, 444
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PscI	ACATGT	2 cut(s)	408, 626
PspN4I	GGNNCC	2 cut(s)	262, 582
PspPI	GGNCC	1 cut(s)	330
RsaI	GTAC	2 cut(s)	270, 565
RsaNI	GTAC	2 cut(s)	269, 564
RseI	CAYNNNNRTG	2 cut(s)	428, 468
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	405, 673
SatI	GCNGC	2 cut(s)	319, 443
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	2 cut(s)	124, 291
SfaNI	GCATC	1 cut(s)	586
SgrAI	CRCCGGYG	1 cut(s)	607
SmiMI	CAYNNNNRTG	2 cut(s)	428, 468
Sse9I	AATT	2 cut(s)	19, 353
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	318, 567
SspMI	CTAG	3 cut(s)	56, 69, 621
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	588
StyI	CCWWGG	2 cut(s)	115, 279
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	4 cut(s)	78, 300, 507, 565
TaqI	TCGA	4 cut(s)	13, 28, 375, 413
TasI	AATT	2 cut(s)	19, 353
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	2 cut(s)	15, 30
Tru1I	TTAA	2 cut(s)	405, 673
Tru9I	TTAA	2 cut(s)	405, 673
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	370, 486, 646
TspGWI	ACGGA	1 cut(s)	402
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	2 cut(s)	412, 630
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	3 cut(s)	56, 69, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.