Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016409

Physical Location & Seq

Genomic Coordinates Reverse (-)

41833334 .. 41834200

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025081

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAATGTGTTTGTGAATCGGGCCAAGGCTCAGGTGAAGATCGGAGGCTTTGAGCGGGCTAGACGTACCGCCGTTTCACCGGCCCCCCCTCCCAGAAGACGCTTACTCGTGACGCACCTGCACATGGAGCTGATGAGTTCTACGTTCGATGGGCCAGGGGTGGATATCTGGGCACTCGGGTTCATTCTAGCTGAAATGGTACTTGGCAATGCCATGTTTATGGCAAGATCGGAGGCCAGCCAACTCTACAGCATCTACTGTCATCTAGGAATTCCCAGGGCAGAGTGGCAAGATCTGTTACCTCATTGTAGTCCACGATTCCCTGAACTGAACGAGATGGATTGCTTCCCACCAGAAGTCTTGCCACTCCTCTTGATGCGCAGCAGCAATCCAGCTAACAGGATTTCTGCTCGAGAGTGCCTGCGGGATCCATTCTTTTTCCCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005524 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030554 GO:0031323 GO:0031326 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0097367 GO:0097472 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

150

Amino Acids

16.93

Weight (kDa)

8.48

Isoelectric Point (pI)

65.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 146	5.9e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016409)

Species	Orthologous Gene IDs
malus_domestica	MD04G1180000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0459641 RchiOBHm_Chr3g0459651
rosa_laevigata	RLG00000025081 RLG00000025082
rosa_multiflora	Rmu_co8426941.1_g000001 Rmu_sc0023706.1_g000008
rosa_samantha	Rh3AG094400 Rh3AG094500 Rh3BG098200 Rh3CG098500 Rh3CG098600 Rh3DG099600
rosa_wichuraiana	Rw0G013800 Rw3G008120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	126
Acc16I	TGCGCA	1 cut(s)	380
Acc36I	ACCTGC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	3 cut(s)	55, 69, 424
AclWI	GGATC	2 cut(s)	422, 435
AcsI	RAATTY	1 cut(s)	270
AfaI	GTAC	2 cut(s)	67, 201
AfiI	CCNNNNNNNGG	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	154, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	3 cut(s)	130, 191, 395
AluI	AGCT	3 cut(s)	130, 191, 395
AlwI	GGATC	2 cut(s)	422, 435
Ama87I	CYCGRG	2 cut(s)	176, 411
AoxI	GGCC	4 cut(s)	21, 81, 152, 234
ApeKI	GCWGC	2 cut(s)	381, 384
ApoI	RAATTY	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	3 cut(s)	21, 82, 152
AsuHPI	GGTGA	2 cut(s)	46, 69
AvaI	CYCGRG	2 cut(s)	176, 411
BaeGI	GKGCMC	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	427
BauI	CACGAG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	393, 396
BccI	CCATC	2 cut(s)	143, 331
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	156, 277
BfaI	CTAG	3 cut(s)	60, 188, 266
BfmI	CTRYAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	126
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	2 cut(s)	382, 385
BlsI	GCNGC	2 cut(s)	383, 386
Bme1390I	CCNGG	2 cut(s)	156, 277
BmeT110I	CYCGRG	2 cut(s)	176, 411
BmgT120I	GGNCC	3 cut(s)	21, 82, 152
BmiI	GGNNCC	2 cut(s)	84, 429
BmrFI	CCNGG	2 cut(s)	156, 277
BmsI	GCATC	2 cut(s)	261, 366
BpiI	GAAGAC	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	30
BsaJI	CCNNGG	4 cut(s)	24, 155, 275, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	156, 277
BseDI	CCNNGG	4 cut(s)	24, 155, 275, 276
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	393, 396
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	4 cut(s)	23, 83, 154, 236
BsiHKCI	CYCGRG	2 cut(s)	176, 411
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	124
BsnI	GGCC	4 cut(s)	23, 83, 154, 236
BsoBI	CYCGRG	2 cut(s)	176, 411
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	39, 227, 292, 427
BspACI	CCGC	3 cut(s)	55, 69, 424
BspANI	GGCC	4 cut(s)	23, 83, 154, 236
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	84, 429
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	422, 435
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	4 cut(s)	24, 155, 275, 276
BssMI	GATC	4 cut(s)	39, 227, 292, 427
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	156, 277
Bst4CI	ACNGT	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	57, 238, 422
BstDEI	CTNAG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	4 cut(s)	42, 230, 295, 430
BstMBI	GATC	4 cut(s)	39, 227, 292, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	156, 277
BstSCI	CCNGG	2 cut(s)	154, 275
BstSFI	CTRYAG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	393, 396
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	292, 427
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	2 cut(s)	292, 427
BsuRI	GGCC	4 cut(s)	23, 83, 154, 236
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	57, 238, 422
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	21, 82, 152
CseI	GACGC	2 cut(s)	108, 121
Csp6I	GTAC	2 cut(s)	66, 200
CspCI	CAANNNNNGTGG	2 cut(s)	354, 389
CviAII	CATG	2 cut(s)	124, 214
CviQI	GTAC	2 cut(s)	66, 200
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	4 cut(s)	41, 229, 294, 429
DpnII	GATC	4 cut(s)	39, 227, 292, 427
Eco130I	CCWWGG	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	166
Eco88I	CYCGRG	2 cut(s)	176, 411
EcoRI	GAATTC	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	154, 275
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	127, 217
FaiI	YATR	3 cut(s)	125, 215, 221
FatI	CATG	2 cut(s)	123, 213
FauI	CCCGC	2 cut(s)	48, 417
Fnu4HI	GCNGC	2 cut(s)	382, 385
Fsp4HI	GCNGC	2 cut(s)	382, 385
FspBI	CTAG	3 cut(s)	60, 188, 266
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	2 cut(s)	382, 385
HaeIII	GGCC	4 cut(s)	23, 83, 154, 236
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	2 cut(s)	108, 121
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	2 cut(s)	127, 217
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	2 cut(s)	16, 318
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	2 cut(s)	46, 69
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	44, 232
Hpy188III	TCNNGA	3 cut(s)	109, 373, 413
Hpy8I	GTNNAC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	2 cut(s)	64, 143
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	64, 143
Hsp92II	CATG	2 cut(s)	127, 217
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	39, 227, 292, 427
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	2 cut(s)	393, 396
LweI	GCATC	2 cut(s)	261, 366
MaeI	CTAG	3 cut(s)	60, 188, 266
MaeII	ACGT	2 cut(s)	64, 143
MaeIII	GTNAC	2 cut(s)	109, 297
MalI	GATC	4 cut(s)	41, 229, 294, 429
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	4 cut(s)	39, 227, 292, 427
MboII	GAAGA	2 cut(s)	49, 108
MflI	RGATCY	2 cut(s)	292, 427
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	1 cut(s)	270
MnlI	CCTC	5 cut(s)	38, 99, 226, 312, 380
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	156, 277
MvaI	CCWGG	2 cut(s)	156, 277
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	4 cut(s)	39, 227, 292, 427
NlaIII	CATG	2 cut(s)	127, 217
NlaIV	GGNNCC	2 cut(s)	84, 429
NmuCI	GTSAC	1 cut(s)	109
NsbI	TGCGCA	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	411
PaqCI	CACCTGC	1 cut(s)	126
PasI	CCCWGGG	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	16, 318
PkrI	GCNGC	2 cut(s)	383, 386
Psp6I	CCWGG	2 cut(s)	154, 275
PspGI	CCWGG	2 cut(s)	154, 275
PspN4I	GGNNCC	2 cut(s)	84, 429
PspPI	GGNCC	3 cut(s)	21, 82, 152
PsuI	RGATCY	2 cut(s)	292, 427
RsaI	GTAC	2 cut(s)	67, 201
RsaNI	GTAC	2 cut(s)	66, 200
RseI	CAYNNNNRTG	1 cut(s)	218
SatI	GCNGC	2 cut(s)	382, 385
Sau3AI	GATC	4 cut(s)	39, 227, 292, 427
Sau96I	GGNCC	3 cut(s)	21, 82, 152
ScrFI	CCNGG	2 cut(s)	156, 277
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	8 cut(s)	36, 67, 120, 132, 146, 193, 304, 397
SfaNI	GCATC	2 cut(s)	261, 366
SfcI	CTRYAG	1 cut(s)	247
Sfr274I	CTCGAG	1 cut(s)	411
SlaI	CTCGAG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	3 cut(s)	55, 69, 424
SspMI	CTAG	3 cut(s)	60, 188, 266
StyD4I	CCNGG	2 cut(s)	154, 275
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	2 cut(s)	67, 146
TaqI	TCGA	2 cut(s)	147, 412
TasI	AATT	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	16, 318
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	381, 384
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	17, 172
XapI	RAATTY	1 cut(s)	270
XhoI	CTCGAG	1 cut(s)	411
XspI	CTAG	3 cut(s)	60, 188, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.